Cyclobacterium xiamenense: ABWH99_02660
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Entry
ABWH99_02660 CDS
T10772
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
cxi Cyclobacterium xiamenense
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxi03019
]
ABWH99_02660
03009 Ribosome biogenesis [BR:
cxi03009
]
ABWH99_02660
Messenger RNA biogenesis [BR:
cxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABWH99_02660
Ribosome biogenesis [BR:
cxi03009
]
Prokaryotic type
rRNA processing factors
ABWH99_02660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
RNase_E_G_Thio
DUF5351
Motif
Other DBs
NCBI-ProteinID:
XHC46423
LinkDB
All DBs
Position
636536..638107
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AA seq
523 aa
AA seq
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MSSELLIDSSQNGSRIALLKNKSLIELHVEEEDNKFKVGDIYLGSVKKIVNGLNAAFIDV
GFEKDAFLHYQDLGPRVNSLNKLVKLIRNKSHQGTSLKGFENEPEIDKLGKISQVLSKNN
QVLVQVVKEPISTKGPRLSCELSLAGRYLVLVPFSDTVNVSKKIRSAEERRRLARLITSI
KPANFGVIIRTVADGQSVTELDKDLRNLLETWEDGMRKLQKAKVKDKIIGEMSLASSIIR
DLLNESFDAITVEDEVIYDQMRSYIRSIAPEKEKIVKLFNGKAKLFESFGIEKQIKSLFG
TTVSLPQGGYLIIEHTEALHVVDVNSGNKSNQENDQENTGLKTNLVAVKEIARQLRLRDM
GGIIVIDFIDMKKADNKRAIFEAMKEAMRDDRSKNTILPLTKFGLMQITRQRVRPEMNIV
TKETCPSCNGTGKIQASILVADKLEKDLNHLATHQNESKIKIALHPYLYAYFTHGIFSKR
IRWFFNYYKWISLIKDSSLPVTEYKFLDSSGEPIEVIVKSESE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgagttcagaattattaattgattcatctcaaaacggtagtcgcattgccttgttgaaa
aacaaaagcttgattgagcttcacgtagaagaggaagacaacaagtttaaagttggagac
atctatcttggttccgtaaagaaaattgtcaatggtctaaacgccgcattcattgatgtg
ggttttgaaaaggacgcttttctgcattaccaggatcttggaccaagggtaaacagcctt
aacaagctggtaaaacttatccgaaacaaaagccaccagggaactagcctgaagggcttc
gaaaacgaacctgaaatagacaagcttgggaagatttctcaggtgctgtcaaaaaacaat
caggtgttggttcaggtagtgaaagaaccaatttcaaccaaaggtccgcgtctatcctgt
gagctctcccttgctggtcgatacctggtgttggtgcctttttcggacacggtaaacgta
tcaaaaaagatacgtagcgccgaagaaaggcgaagacttgcaaggcttattacatccatc
aaacccgcaaattttggagtaatcattcggaccgtggcagatggacaatctgtcaccgaa
ctggataaagatctcagaaatctgcttgaaacctgggaagatggcatgcgtaagctgcaa
aaagccaaggtaaaagacaaaatcatcggagaaatgagtttggcctcctccattatcaga
gacctgctcaacgaatcgttcgacgcaatcacggtagaggatgaagtaatttacgatcag
atgcgatcttatataagatccattgctccagaaaaagaaaaaattgttaagcttttcaac
ggaaaagcaaagctctttgaaagttttggtatagaaaagcagatcaaaagcctgtttgga
accaccgttagtctgcctcagggtggatacctcattattgagcacacagaagcccttcac
gtggtggatgtaaatagcggaaataaatccaaccaggaaaacgatcaggaaaataccggc
ctcaaaaccaatttggtggcggtaaaggaaattgcaagacaattaaggctacgcgacatg
ggcggtatcatcgtcattgattttattgacatgaaaaaggccgataacaaacgggcgatt
ttcgaagcaatgaaggaagcgatgcgggatgaccgatctaaaaacacgattctcccgctg
acgaaattcggattgatgcaaatcacccgtcaacgcgtccgacccgaaatgaacattgtc
accaaagaaacctgcccttcctgcaatggaaccggaaaaatccaggcatcaatcctggta
gcagataaattggaaaaagatttaaaccatcttgcaacccaccaaaacgaatcgaagatt
aaaatagccttgcatccttatctgtatgcctatttcacacacggcatcttttccaaaagg
atacgatggttttttaactattacaaatggatcagtctgattaaagattcttcactaccg
gtgacggagtacaaattcctggatagttcaggagaacctatagaagttattgtaaaaagc
gagtctgagtaa
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