Cyclobacterium xiamenense: ABWH99_04280
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Entry
ABWH99_04280 CDS
T10772
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cxi Cyclobacterium xiamenense
Pathway
cxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH99_04280 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxi03019
]
ABWH99_04280 (recQ)
03400 DNA repair and recombination proteins [BR:
cxi03400
]
ABWH99_04280 (recQ)
Enzymes [BR:
cxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWH99_04280 (recQ)
Messenger RNA biogenesis [BR:
cxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWH99_04280 (recQ)
DNA repair and recombination proteins [BR:
cxi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABWH99_04280 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
HTH_40
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
XHC46730
LinkDB
All DBs
Position
1011784..1013922
Genome browser
AA seq
712 aa
AA seq
DB search
MQPLDVLKQYFGYASFRGKQEAIIEKVLAKKDCIALMPTGAGKSVCYQVPAMILPGLTLV
ISPLIALMKDQVDALNELGIPAAFLNSSQDISEQRHISDEVSKGRIKLLYVAPERLFGGT
YPLLDLLATLNLSLVAVDEAHCVSQWGHDFRPEYLNLGKLRGIFPDTTFLALTATADPQT
RADIASGLQLVQPEWFISSFDRPNITYRVGLRSDAFGKLLDFLSVRPRDSGIVYCLSRKS
VEETAAKLQANGHEAVPYHAGLPREIRQANQEKFLRDEVRIIVATVAFGMGIDKSNVRFV
VHTNMPQNIESYYQETGRAGRDGLPSEALLFYSIGDSITLSRMLETAEDPGYVRHMKAKL
ETMVRYCQSSECRRKFLLQYFGEAYPGECGNCDRCLQKNDKEDMTIYSQMLLSAVVRLEQ
KFGLGQVILVLKGSQSAKISGWQKELSVFGIGKDRPAEFWKSLGRQLIAEGYLIQEDPLR
PIVKLSQMAWETLKKKDRIFLRMETAEMHPEERESEQDDKLLEKLKALRRSLARKQDVPP
YIIFSDATLVGMAKKYPTSKQALLQIHGVGNQKLENYGDSFLKVIQHYLEENPSISGTGG
PSMPPSPKRIGKQSNPSSINETLALLNRGNSLDEIVEKRGLARSTIEGHVVKLLASGESM
PEDWLSDMQLQEIGDAATHLQTTLLNPLKAHFGEKYSYFELRVGVWAVKSRE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccactggacgtattaaagcaatattttggatacgcttcctttcgaggcaagcaa
gaggcaatcatcgaaaaggtactggcaaaaaaagattgcattgccttgatgcctaccgga
gcaggcaagtcggtttgttaccaggtacccgcaatgattcttcctggcctgaccctggtg
atttctccgctaattgcattgatgaaggaccaggtggatgccctgaacgaattagggata
cctgcggcatttctgaactcaagccaggatatcagcgagcagcgtcacatctctgacgaa
gtgtccaagggtagaatcaaactgttgtatgtggcgccggaacgcctttttggggggact
taccccttgctggacctgctcgctacgttgaacctgtccttggtggcagtggacgaggcg
cattgtgtttcccaatgggggcatgatttcaggccggaatacctaaatttggggaagcta
cggggtatttttcccgataccacttttttggcacttacggccactgccgacccacaaacc
agggctgatattgcatcggggttgcagctggtacaaccggaatggttcatctcttctttt
gaccgtcccaatattacctatcgcgtgggtctacgctcggacgcatttgggaagctgctg
gattttttgtccgtccgtccccgggattccggcattgtgtattgcttgtcccggaaatcg
gtggaggaaacggcggcaaagttgcaagccaatggccatgaggcggttccgtatcatgcc
ggccttcccagggaaatccggcaggccaaccaggaaaaattccttcgggatgaggtgcgg
atcattgtggctacggtggcttttggaatggggatagacaagtcgaacgtccgctttgtg
gtgcataccaatatgccacagaacatcgaaagctattaccaggaaaccggacgtgccggc
agggatggactgccgagcgaggcactgctcttttacagcatcggggatagcattaccctc
tcacgcatgctggaaactgccgaggatcccggatatgtgcgccacatgaaggccaagtta
gaaacgatggttcggtattgtcaatccagcgaatgcaggagaaaatttttactgcagtat
tttggagaagcttacccgggggaatgcggaaattgtgatcgctgtcttcagaaaaacgac
aaagaggacatgacgatttattcccagatgctgctttcggcagtggtgcggttggaacaa
aaatttggattggggcaggtaattttggttttgaaagggtctcagtcagccaaaatatcc
ggatggcagaaggagttgtcggtgtttggtatcggaaaggaccgacctgcggaattctgg
aaatcactgggtcgacagctgatcgcggaagggtatctgatacaggaggatccccttcga
ccgattgttaaactcagccaaatggcctgggaaacattgaaaaaaaaagacaggatcttt
ctccggatggaaacggcggagatgcacccggaagaaagggaaagcgaacaggacgacaag
ttgcttgaaaaactgaaggccttgcgccgttcgctggcgagaaagcaagacgttcctccc
tatatcatcttttccgacgcgacactggtgggaatggcgaaaaagtacccaacgagcaag
caagcgcttcttcagatacacggagtagggaaccagaagctggaaaactatggggattcg
tttttgaaggtaattcagcactacctggaagaaaatccttcgatctccgggacaggcggc
ccctccatgcccccctcgccgaaaagaatcggcaaacaaagtaatccttcttccataaac
gagaccttagccttgcttaaccggggaaattcactggatgaaattgtggaaaaaagagga
ctggcccgaagtacgatcgaggggcacgtggtgaaattgctggcctccggggagagtatg
ccggaggattggctttctgacatgcaacttcaggaaatcggggatgcggccacccatctt
caaaccacccttttgaatccgcttaaagcgcatttcggagaaaaatacagctattttgag
cttcgcgtaggtgtatgggcagtcaagagccgagaatag
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