Cyclobacterium xiamenense: ABWH99_05080
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Entry
ABWH99_05080 CDS
T10772
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cxi Cyclobacterium xiamenense
Pathway
cxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH99_05080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxi03019
]
ABWH99_05080
Enzymes [BR:
cxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWH99_05080
Messenger RNA biogenesis [BR:
cxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWH99_05080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Helicase_C_2
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XHC46878
LinkDB
All DBs
Position
complement(1187416..1188768)
Genome browser
AA seq
450 aa
AA seq
DB search
MSDQLQSFDNFNLNKQLLRAVQEIGYEKPTPIQEKAIPLALSGHDLLGIAQTGTGKTAAF
VLPVLFKVKYAQGQHPRALILAPTRELVMQIEEAIIGFGKHTDLRYVCLYGGLGPKPQIE
KVQQGVDILIATPGRFLDLYKKGVVYTRDIKTMVLDEADKMLDMGFLPQIRAILEIIPVK
RQNMLFSATFSDKVENLSHEFLEFPERVEVAPQASTADTIDQYKYYVPNVRTKLDLLEKV
VNGPGFDRGIVFTKSRKNAEEVFRYLQHRQVGSIRVIHANKGQNTRINSMDEFKKGLVKI
LVATDVAARGLDISMVSHVVNFDVPLIYEDYVHRIGRTGRAENEGTALTFINPAESYHFE
KIEAIIRKEVRERRLPKDIPAHETPFDEQQGYEREIDKQKRGEDPEFKGAFHEKKSYQPA
RVEKPKKRGNKNSKAKRNRNQMKTKGKYKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcaactgcaatcttttgacaattttaatctcaacaagcaacttttacgcgca
gtacaggaaatcggctacgagaaacccacccccatacaggaaaaagccattcccctggcc
ttgtccggtcacgaccttctcggcatcgcccaaaccggcaccggtaaaaccgctgctttc
gtactcccagtcctgtttaaagtcaaatacgcccagggacaacacccgcgggcactgata
ctggcacccactcgggaactggtcatgcaaatcgaagaagcgattataggttttggtaaa
cacaccgacctacgctacgtttgcctgtacggtggactgggccccaaaccgcaaatcgaa
aaagtacaacagggcgtggacatcctcattgccaccccggggcgctttctcgatctctac
aaaaagggcgtggtatacacccgggacatcaaaaccatggtactggacgaagcggacaaa
atgctcgacatgggttttcttccgcaaatccgcgccatcctggaaattattcccgtgaaa
cggcaaaacatgctattttctgcgacattcagtgataaagtcgaaaatctgtcgcacgaa
tttctggaatttccagaacgcgtagaagtagctcctcaagccagcacggcagacaccatc
gaccaatacaagtactacgtacccaacgtccggaccaaactggacctgttggaaaaagtc
gtaaacgggcctgggtttgaccgcggcatcgtatttactaagtccagaaagaatgccgag
gaggtgtttcgctacctgcagcatcggcaggttggaagtattcgggtcatccatgcaaac
aaaggccaaaacacacgcatcaacagcatggacgaatttaaaaaaggcttggtgaaaatc
ctggtggctaccgacgtggctgcccggggactggacatcagcatggtcagccatgtggta
aacttcgacgtgccgctcatctacgaggattacgtccatcgaattggccgaacaggcagg
gcagagaacgaaggcacagcgctgacctttatcaatccagccgaaagctaccacttcgaa
aaaattgaagcgattattcgcaaggaagttcgggaacgacgcctcccaaaagacattcct
gcacacgaaaccccctttgacgagcagcaaggctacgaacgggaaatcgataaacaaaaa
agaggggaggatccggaattcaagggtgctttccacgaaaaaaaatcctaccagccagcc
cgggtggagaaaccgaaaaaacgtggcaataaaaacagcaaagcaaagcgcaacagaaac
cagatgaaaaccaagggaaagtacaaaaaataa
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