Cyclobacterium xiamenense: ABWH99_18475
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Entry
ABWH99_18475 CDS
T10772
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cxi Cyclobacterium xiamenense
Pathway
cxi03030
DNA replication
cxi03430
Mismatch repair
cxi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWH99_18475
03430 Mismatch repair
ABWH99_18475
03440 Homologous recombination
ABWH99_18475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cxi03032
]
ABWH99_18475
03400 DNA repair and recombination proteins [BR:
cxi03400
]
ABWH99_18475
Enzymes [BR:
cxi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABWH99_18475
DNA replication proteins [BR:
cxi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABWH99_18475
DNA repair and recombination proteins [BR:
cxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABWH99_18475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
GIY_YIG_2
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
XHC44898
LinkDB
All DBs
Position
complement(4513955..4515325)
Genome browser
AA seq
456 aa
AA seq
DB search
MYAIVDIETTGGFAAQHRIIEIAVVLHDGEKITGHYQQLLNPGRSLPDFITGLTGIDSGM
LTDAPDFSEVAVELWELLAGKIFVAHNVSFDYNFIKQAFARENKDFRPRRLCTVRLGRKI
FPGLRSYSLGRLCEARGIQVTDRHRALGDAWATALLFGQMLQEDRTGEIPRAIKGKEKAR
ILPPNISHEQYRQLPASTGVYYFHDQNGKVIYVGKAVNIKSRFESHFTGKSKVNLKSEIH
SVSYEVTGSELLALLLEALEIKRLWPKYNRSLKVKAASWGIFAYSDQQGYQRFQVSKILP
GVKPILTFGTHAEAWKQLLEKTGELALCPKLTGIQKTPGACYDFSLGKCSGACCGAEAPE
AYNRKAAGLWEEVGARTGQRFLIKDRGRSPEEEAVLLVEDGFLAAFGYIDQATDLRHSGE
VLSFLKPVKRLVETQALLRSFLPKLPQTRIIPLAED
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccattgtagatattgagactaccggcggctttgctgcccagcaccggatcatt
gagattgccgttgtcttgcacgatggggaaaagattaccggccactaccagcaattgctg
aatcccggaaggtctttgcctgattttatcaccggtcttaccgggatcgactcgggcatg
ttgacggatgcgcccgatttttccgaagtggccgttgaattatgggagctgctagcggga
aagatttttgtggcgcataacgtgagtttcgactataatttcatcaagcaggcatttgct
cgggaaaacaaggatttcagaccccgccgattatgcacggtccggcttggcagaaagatt
tttcccggtctcagaagctacagtctgggcaggttgtgtgaagccagaggcattcaggta
acggatcggcaccgggcgctgggagatgcctgggccacggccttgctattcgggcaaatg
cttcaggaagatcgtaccggtgaaattccccgggccatcaaaggaaaggagaaagcccgc
atacttccgccgaatatcagccacgaacagtaccgtcagttgcccgcttccacgggtgtg
tactattttcacgatcaaaacggcaaggtcatttacgtaggcaaggcagtcaatataaaa
agccggtttgagagccattttaccggaaaatcgaaggtaaacctgaaatccgaaatacac
tccgtcagctacgaagtcaccggaagtgaattgcttgcgctgttgctggaggcgttggag
ataaaacggttgtggccaaaatacaaccgctccctaaaagtgaaagcagcctcctggggg
atctttgcttacagcgatcaacaggggtatcaacggtttcaggtaagtaaaattttgccg
ggtgtaaaacccatcctgacctttggtacccatgccgaagcctggaaacagctgctggaa
aaaaccggcgaacttgcgctgtgtccaaaattgacggggatacaaaaaactcccggagct
tgttatgatttttccctgggaaaatgcagcggtgcctgctgcggcgccgaggctcccgag
gcgtacaaccgaaaggcagcgggcttgtgggaggaagtcggtgcccgtacaggacaacgc
ttccttatcaaagaccggggaaggagccctgaagaggaagccgtgctacttgtggaggat
gggtttctggcggcctttggctacatcgatcaggcaacagaccttcggcacagtggggaa
gtactctcgtttttgaaaccggtaaaacgcctggtagaaacccaggcgcttttgcggtca
tttttgccgaagttacctcaaacacggattatacccctggcggaagattga
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