Cellulomonas xiejunii: NP048_00565
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Entry
NP048_00565 CDS
T09093
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cxie
Cellulomonas xiejunii
Brite
KEGG Orthology (KO) [BR:
cxie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxie03019
]
NP048_00565 (hrpA)
Enzymes [BR:
cxie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NP048_00565 (hrpA)
Messenger RNA biogenesis [BR:
cxie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NP048_00565 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
NACHT
SRP54
TsaE
T2SSE
PhoH
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UUI72000
LinkDB
All DBs
Position
complement(122815..127365)
Genome browser
AA seq
1516 aa
AA seq
DB search
MSTSDPAPADAAPPEGPRGEGPRGEGAHADGQRAPGRRRGARAGRGAGRRTQDGPRDGRT
DEGRGPERSSRERAPRHDAGHRPRRDDARLSRTAEARAAVTLPPIVYPEQLPVSARREEI
AAALRDHQVVVVAGETGSGKTTQIPKIALELGRGRAGQIGHTQPRRIAARTVAERIADEL
NVPLGGVVGYQVRFTDESSDSTLVKVMTDGILLAQIQRDPMLRMYDTLIIDEAHERSLNI
DFILGYLTRLLPQRPDLKLVITSATIDSDRFARHFAGPPTAEHPDGVPAPVVEVSGRTYP
VEIRYQPLSPDDGPDRDMVTGITEAVDELMAEGPGDILVFLSGEREIRDAEDALRGSLGP
RVDPKHPNGVDIVPLYARLSAAEQRRVFEPHTRRRVILATNVAETSLTVPGVRYVVDPGT
ARISRFSKATKVQRLPIEPISQASANQRSGRSGRVAPGIAIRLYSQEDFESRPEYTEPEI
LRTSLASVILQMIAVGVVASPDEVVDFPFVDPPDVRSVRDGVGLLTELHALEEVRGRTRL
TETGRQLAQLPIDPRLARMVVEAGRRGVAREVVVIAAALSIQDPRERPAESRETADALHR
RFADPSSDLLTYLNLWTYLRDRQRELSGSAFRRMCKSEHLHYLRVREWQDVVTQLREMAK
GLGVHAKGAPTPTSDVAPAADGHGRDGRRDGGRHTPTGAPTQEAGTVERPDAVQTRWTWD
ADTIHRAMLPGLLSQIGMQLVTDVAAGNPPKGRDGKPRKPDARARNEYLGARGARFAIFP
GSGLSRKPPSWVMAAELVETSRLWARDVAKVDPAWVEEAAAHLVKRTFSEPAWSTRQGAA
MVNEKVLLYGVPVVAQRRVLLAKTDPEQARELFVRHALVQGEWTTHHKFFHENRRLLDEA
EALEARARRRDLVVDDDALFDFYDARIPPEVVSARHFDTWWKVAKRADPDLLSFTRELLV
GDDAAEIDEHAFPSRWPQGELSFPLTYQFEPGTEADGVTIHIPISQLPRVRPEGFDWMVP
GMRAELLTATIRALPKPVRVQLVPAPDVARAVDAWLAENSASWADTVRAGDAAPSFREMF
ARAVRALRDVEVPADAVDEDRLPPHLRMTFRVVGDRGGVIDEGKDLLALQRRLADRAQDA
VSSAVRTAVRAAMEQAAAQAGTSPPAPTQPTPTQPTPTQPTPTQPSAATPTPGARVQSSH
APGAPARSGATPDLERTGLTTWPDLPALPDVIEARTPAGGLVRAYPTLVEEGSGARATVA
LRVLADAAVAQAAARRGLRRLLLLDVGLATPRVTSRWTGTQALALAASPYPSTDALVADV
QLASIDRLIARHLQGRTPRDIRDADAYAALRGAVRDALEDDVHRVVGDLVGVLSAWRELD
SDVRATSSLALLATAQDVREQAAALVHDGFVSRVGADRLPQLVRYLRAARHRLAKAADNP
TRDADLAWQVHDVEQLYTAARERAATAPPDPARDAALDDVRWLLEELRVSLFAQQLGTPV
PVSPTRIRKALAAIGA
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacgtccgaccccgcccccgccgacgccgcaccccccgagggtccgcgcggcgag
ggtccgcgcggcgagggtgcgcacgccgacggtcagcgcgctccggggcgacgtcgtggc
gcccgggccgggcggggtgccggtcggcggacccaggacgggccacgcgacgggcgaacg
gacgagggccggggccccgagcgctcgtcccgcgagcgggctccccgccatgacgcaggc
caccggccccgccgggacgacgcccgcctcagccgcaccgccgaggcccgcgcagcggtc
accctccccccgatcgtctaccccgagcagctccccgtctccgcccgccgcgaggagatc
gccgccgccctgcgcgaccaccaggtcgtcgtcgtcgcgggtgagaccggctcgggcaag
acgacgcagatccccaagatcgcgctcgagctgggccgcggtcgcgccggccagatcggc
cacacccagccccgccggatcgcggcgcgcacggtcgccgagcgcatcgcggacgagctc
aacgtccccctcggcggcgtcgtcgggtaccaggtgcggttcacggacgagtcgtccgac
tcgacgctcgtcaaggtgatgaccgacggcatcctgctcgcgcagatccagcgcgacccg
atgctgcggatgtacgacacgctcatcatcgacgaggcgcacgagcgcagcctcaacatc
gacttcatcctcgggtacctcacgcggctgctgccgcagcggccggacctcaagctcgtc
atcacgtcggcgacgatcgactcggaccggttcgcgcggcacttcgccggcccgccgacc
gcggagcaccccgacggcgtccccgcgcccgtcgtcgaggtcagcggccgcacgtacccc
gtcgagatccggtaccagccgctgtcccccgacgacggcccggaccgtgacatggtcacg
ggcatcaccgaggccgtcgacgagctcatggccgaggggcccggcgacatcctcgtgttc
ctgtccggtgagcgggagatccgcgacgccgaggacgcgctgcgcggctcgctcggcccg
cgcgtcgaccccaagcacccgaacggcgtcgacatcgtgccgctgtatgcacgcctgtcc
gcggccgagcagcgacgcgtcttcgagccccacacgcgccggcgcgtcatcctggcgacc
aacgtcgcggagacgtcgctgaccgtgccgggcgtccggtacgtcgtcgaccccggcacg
gcgcgcatctcgcggttctccaaggcgacgaaggtgcagcgcctgccgatcgagccgatc
tcgcaggcgtccgccaaccagcgctcgggccggtcgggccgtgtggcgccgggcatcgcg
atccgcctgtactcgcaggaggacttcgagtcccgccccgagtacaccgagccggagatc
ctgcgcacgtcgctggcgtcggtgatcctgcagatgatcgcggtgggcgtcgtggcgtcc
ccggacgaggtcgtcgacttcccgttcgtcgacccgccggacgtccgctccgtccgcgac
ggcgtcggcctgctcaccgagctgcacgcgctcgaggaggtccgcggccgcacgcgcctc
accgagacgggccggcagctcgcgcagctgccgatcgacccgcgcctggcgcgcatggtc
gtcgaggccgggcgccgcggcgtcgcgcgggaggtcgtcgtcatcgccgccgcgctgtcc
atccaggacccgcgcgagcgccccgccgagtcccgcgagacggccgacgcgttgcaccga
cggttcgccgacccgtcgtcggacctgctcacctacctcaacctgtggacgtacctgcgc
gaccggcagcgcgagctgtccggctcggcgttccggcgcatgtgcaagtccgagcacctg
cactacctgcgcgtgcgcgagtggcaggacgtcgtcacccagctgcgcgagatggccaag
ggcctgggcgtgcacgccaagggcgcaccgaccccgacgtccgacgtcgccccggcagcg
gacgggcacgggcgcgacgggcgccgcgacggtggccggcacaccccgacgggcgcaccg
acgcaggaagccggcaccgtcgagcgccccgacgcggtgcagacgcggtggacgtgggac
gccgacacgatccaccgcgcgatgctgccgggcctgctgtcgcagatcggcatgcagctc
gtcaccgacgtcgccgcgggcaacccgcccaagggccgcgacggcaagccgcgcaagccc
gacgcgcgcgcccgcaacgagtacctcggcgcgcgcggtgcgcggttcgcgatcttcccg
gggtcgggcctgtcgcggaagcccccgtcgtgggtcatggccgccgagctcgtcgagacc
tcccggctgtgggcgcgcgatgtcgcgaaggtcgacccggcgtgggtcgaggaggccgcg
gcccacctcgtgaagcgcaccttctccgagcccgcgtggtcgacgcggcagggcgcggcg
atggtcaacgagaaggtgctgctctacggcgtgccggtcgtcgcgcagcgtcgcgtgctg
ctcgccaagacggacccggagcaggcgcgcgagctgttcgtccggcacgcgctcgtccag
ggcgagtggacgacgcaccacaagttcttccacgagaaccgccgcctgctcgacgaggcc
gaggcgctcgaggcccgcgcccgccgccgtgacctcgtcgtcgacgacgacgcgctcttc
gacttctacgacgcgcgcatcccgcccgaggtcgtgtccgcgcggcacttcgacacctgg
tggaaggtcgcgaagcgcgccgacccggacctgctgtccttcacgcgcgagctgctggtc
ggggacgacgccgccgagatcgacgagcacgcgttcccctcgcgctggccgcagggcgag
ctgtcgttcccgctgacctaccagttcgagcccggcaccgaggccgacggcgtcaccatc
cacatcccgatctcccagctgccgcgcgtgcggcccgagggcttcgactggatggtcccg
ggcatgcgcgccgagctgctgaccgcgacgatccgcgcgctgcccaagccggtgcgcgtg
cagctggtcccggcacccgacgtcgcgcgggccgtcgacgcgtggctcgccgagaactcc
gcgtcgtgggccgacaccgtgcgcgccggcgacgccgcaccgtcgttccgcgagatgttc
gcgcgcgccgtccgggcgctgcgggacgtcgaggtgcccgccgacgccgtcgacgaggac
cggctgcccccgcacctgcgaatgacgttccgcgtcgtcggggaccgcgggggcgtcatc
gacgagggcaaggacctgctggccctgcagcggcggctcgccgaccgcgcgcaggacgcc
gtctcctccgcggtgcgcacggccgtacgcgccgccatggagcaggcagccgcccaggcc
ggcacctcgccgcccgctcccacccagcccacccccacccagcccacccccacccagccc
actcccacccagccctccgccgccacccccacccccggcgcgagagtgcaatccagtcac
gcccccggcgccccagcacggtccggcgcgaccccggacctcgagcgcaccggcctcacg
acgtggcccgaccttccggcgctccccgacgtcatcgaggcgcgtaccccggcgggcggc
ctcgtccgcgcctacccgacgctcgtcgaggagggctcgggcgcgcgcgcgaccgtcgcg
ctgcgcgtcctcgccgacgccgctgtcgcgcaggccgccgcccgccgtggcctgcgtcgt
ctgctgctgctcgacgtcgggctcgcgaccccccgcgtgacgagccggtggaccggcacc
caggcgctcgcgctcgccgcgtccccgtacccgagcaccgacgcgctggtggcggacgtc
cagctcgcgtcgatcgaccgactcatcgcccgccacctgcagggacgcaccccgcgcgac
atccgcgacgccgacgcgtacgccgcactgcgcggtgcggtgcgggacgccctcgaggac
gacgtgcaccgcgtcgtgggcgacctcgtcggggtcctgtcggcgtggcgggagctcgac
tcggacgtgcgcgccacgagcagcctcgcgctgctggcgaccgcgcaggacgtgcgtgag
caggcggcggcgctcgtccacgacgggttcgtgtcccgcgtcggtgccgaccgcctgccg
cagctggtccgctacctgcgcgccgcgcggcaccggctggccaaggccgcggacaacccg
acgcgcgacgccgacctcgcgtggcaggtgcacgacgtcgagcagctctacaccgcagcc
cgcgagcgcgccgcgaccgcgccgccggacccggcccgtgacgccgcgctcgatgacgtc
cgctggctgctcgaggagctgcgggtcagcctgttcgcgcagcagctggggacgccggtg
ccggtctcgccgacgcgcatccgcaaggcgctggcggcgatcggggcgtga
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