Synechococcus sp. JA-3-3Ab: CYA_0057
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Entry
CYA_0057 CDS
T00318
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03030
DNA replication
cya03430
Mismatch repair
cya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYA_0057 (dnaE)
03430 Mismatch repair
CYA_0057 (dnaE)
03440 Homologous recombination
CYA_0057 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cya03032
]
CYA_0057 (dnaE)
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_0057 (dnaE)
Enzymes [BR:
cya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CYA_0057 (dnaE)
DNA replication proteins [BR:
cya03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CYA_0057 (dnaE)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CYA_0057 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABC98288
UniProt:
Q2JY24
LinkDB
All DBs
Position
53979..57464
Genome browser
AA seq
1161 aa
AA seq
DB search
MAFVPLHLHSEYSLLDGASQLPLLIEQVVAMGLPGLALTDHGVMYGAIELVKLCKSKGIK
PIIGNEMYVINGDIRDKSRKYPKYHQVVLAKNTQGYKNLVKLTTISHLQGVQGKGIFARP
CINKEYLAQYKEGLIVTSGCLAGEVPQAILQGRPEIARQVAAWYQEQFGDDYYIEIQDHG
YREDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKNRLRYS
GTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGETRMPDYPVPPGHSA
DSYLTELAWQGLAKRCGVAYPDQIPENYQERLRFELNIIQQKGFSSYFLVVWDYVRYARE
HGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDIDTDFCIERRGE
LIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYAEADKMAKLIPVSRGKPAKL
EEMIGENTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVISKDPLDEIVPL
QYNNEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHRGVTIDLDNLPLDD
EKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPGPLDTGMIPDFID
RKHGRKPVTYAHDLLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQADLLRRAMGKKKVS
EMEKHREQFVRGAVERGVAKEVATELFDQMVAFAEYCFNKSHSTAYGLITFQTAYLKANY
PTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIEPPDINRSGLDFTPQGSSILFGLGAVK
NVGEGAIQNILAARQAGGPFTSLADFCQRVDLHVVNRRAIESLICAGAFDGISGNRKQLM
ADLDPILNWAAEQAKSKAIGQASLFDLLGNDQGFIEAPRGPATEDFPPQEKLRLERELLG
FYVSDHPLRRIQEQARLLAPVNLSDLSGYAADTSVGILALLTAIKTVTTKRGDRMAILQL
EDLTGSCEAVIFPKTYERLRHRLEVDQRLFIWAKVDQRDEQVQLIVEDLQPIESVSWVTV
ELPLDSAGTLEDRYRLQTLLARQRSEAKEENRIPVVAAIVAPPHTLWVRLGSQFWVKDAE
ATVAALRQAGYTARSEALASR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcctttgttcccttgcacttgcacagcgagtacagcctcttggatggcgccagccaa
ttgccgcttctgattgagcaggtggtggcgatgggtttgccggggctggccctgacggat
cacggcgttatgtacggggccatcgagctggtgaaactgtgtaaaagcaaagggatcaag
ccgatcatcggcaatgagatgtatgttatcaacggcgatattcgagacaaaagccgcaag
taccccaagtatcaccaagtggttttggccaaaaatacccagggctacaaaaacttggtc
aagctgaccaccatttcccatctccaaggcgttcaaggcaaggggatcttcgctcggccc
tgtatcaacaaagagtatttggcgcaatacaaagaggggttgatcgttaccagcggctgc
ctggccggggaggtgccccaggccattttgcaggggcggccagaaattgcccgccaagtt
gccgcctggtatcaggaacagtttggagatgattactacatcgagattcaggatcacggc
tatcgagaagaccgctttgtcaatgtgcaattggtgcgcattgctcgcgaattagggatc
ccgatcatcctcaccaacgatagccacttcatctcctgttgggatgtggaggctcatgat
gctttgctctgcatccaaacaggcaaatccctcaccgaaaaaaaccgccttcgctacagc
ggcacagagtacttgaaaagcccggaggagatgcgccgcctctgccgcgatcacctggag
caggaggtgatcgacgaagccattgccaacactctcaaggtgctggaaaagatcgagggc
tatgacctatttggggaaacgcgcatgcccgactatccggttccgccgggccattctgcc
gatagctatctcaccgaattggcctggcagggcctggcgaaacgctgcggcgtcgcctat
ccagatcagattccggaaaactatcaggagcgcctgcgctttgagctgaatatcatccaa
caaaagggcttctccagctatttcctggtggtctgggactacgttcgctatgctcgcgaa
cacgggatcccggtgggcccgggccgcggttcggcagccggatccctggtggcctatgct
ttgcagattaccaacatcgatcccgtcaaatatgggttgctcttcgagcgctttctcaac
ccagaacggcaatcgatgccggatatcgataccgatttctgtatcgagcggcggggagag
ctgatcgactatgtaacccgcaaatacggccaggagcgagtggcccagatcatcaccttc
aaccgcatgacttctaaggccattctcaaagatgtcggtcgggtgctggatattccctat
gccgaagccgacaaaatggcaaagctgatcccggtctcgcggggcaaaccggcaaaattg
gaggagatgatcggcgagaacacgccggctccagagttcaaagaaaaatacgagaaagac
ccaaccactcaccgctggatcgagctggcccgcctgttggaaggcaccaacaaaaccttt
ggggttcacgctgccggcgtggtcatctccaaagatcctctagatgagatcgtgcccttg
caatacaacaacgaaggccaaattattactcagtactcgatggaagatatcgagtctctg
ggcctgttgaagatggactttttggggctgcgcaacctgacgatgatccagcgggccgtg
gagctgattcgagagcacagaggggtcactatcgacctggataacctgccattggacgac
gagaaaacttaccaacttttggaaaaaggagagctggaagggatcttccaactggagtct
tccggcatgaagcaggtggtgcgagagctcaagccttccaacttggaagatatttcctcg
gtcttagctctttaccggccagggccattggatacgggcatgatcccggactttatcgat
cgcaagcatggccgcaagccggtaacctacgcccacgatctcctcaagccaatccttcaa
gatacctatggcgccattctctaccaagaacagatcatgcgcattgcccaggacatggcc
ggctataccctgggccaggctgatctattgcggcgggcgatgggaaaaaagaaagtttcc
gagatggagaaacaccgggagcaattcgtccgaggggcagtagagcgaggtgtggccaag
gaagtggctacggagctatttgaccaaatggttgcttttgccgagtattgcttcaacaaa
tcccactctacggcctatggactgattactttccagacagcctatctcaaggccaattat
ccaacagaatacatggcggcgctgctttcttctgtgggaggggatcaagacaaggtccag
cgctacatcacctattgcctgtcgatcgggatccaaattgagccgccggatatcaaccgt
tctggcctggactttacccctcagggatccagcattttgtttggtctaggagcagtgaag
aatgtgggcgagggggcgattcaaaacattctggctgcccgccaggccggaggccccttc
acctctttggccgatttttgccagcgggtggatctgcacgtggtcaaccgccgcgccatc
gagtcgttgatctgtgcgggcgcttttgatggtatttccggcaaccgcaaacagctaatg
gcggatctggatcccatcctcaattgggcagcggagcaggctaagtccaaagccattggc
caagccagcctgtttgatttgttgggcaacgaccagggatttattgaagctccgcggggg
cctgcaactgaagattttccaccgcaagaaaagttaaggctagaacgggagctgttgggc
ttttatgtttcggatcacccgctgcggcggattcaagagcaggcgcggctgttggctcct
gttaacctctccgatttgagcggctacgcagccgatacttctgtaggcattctggccctg
ctgaccgccattaaaacggtaaccaccaagagaggggatcgcatggccattttgcaactg
gaagatctcaccggcagttgcgaagcggtgatcttccccaaaacttacgaacgtttgcgc
catcgtctggaggtggatcaacggctctttatctgggccaaggtggatcagcgggatgaa
caggtgcaattgattgtcgaggacttacagccgattgaatcggtgagttgggttacggtg
gaactccctctggactcggctgggacattggaggatcgataccgtttgcaaacattgctt
gcccgccaacgttcggaagccaaggaagaaaatcgcatccctgttgtggcggccatcgtc
gcccctccccacacgctctgggtgaggctgggatcccaattttgggttaaagatgccgag
gccaccgtggcagctttgcgccaagctggctataccgcccgcagcgaagcgctagcctcc
cgatag
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