Synechococcus sp. JA-3-3Ab: CYA_0305
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Entry
CYA_0305 CDS
T00318
Symbol
hup-1
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
cya
Synechococcus sp. JA-3-3Ab
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cya03032
]
CYA_0305 (hup-1)
03036 Chromosome and associated proteins [BR:
cya03036
]
CYA_0305 (hup-1)
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_0305 (hup-1)
DNA replication proteins [BR:
cya03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CYA_0305 (hup-1)
Chromosome and associated proteins [BR:
cya03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
CYA_0305 (hup-1)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
CYA_0305 (hup-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
KDM5_C-hel
Motif
Other DBs
NCBI-ProteinID:
ABC98526
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All DBs
Position
complement(312014..312340)
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AA seq
108 aa
AA seq
DB search
MASPHLNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRP
RPARQTYHPRTKAPVHIPAAQVPYFVPSPELGHPRRERRGDLEAPPSV
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
gtggcttctccccatctaaatcgccgtttgttggcccgccagatggctgcgcaagtggat
ggcctgaccgtcaaaatggctgccgctgccctagaggccatgctagacagcatcagccaa
tgtctggcggaaggaggatccgtgcggctggcgcgctttggcaccttcttgctgcggccc
cgtccggcccggcaaacctatcacccccgcactaaggctcctgtccacatcccggctgcc
caagtgccctattttgtccccagcccggagctgggacaccctaggagagaacgccgaggg
gatctggaagcgccgccatccgtctag
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