Synechococcus sp. JA-3-3Ab: CYA_0349
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Entry
CYA_0349 CDS
T00318
Name
(GenBank) UvrD/REP helicase domain protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03420
Nucleotide excision repair
cya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYA_0349
03430 Mismatch repair
CYA_0349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_0349
Enzymes [BR:
cya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYA_0349
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYA_0349
MMR (mismatch excision repair)
Other MMR factors
CYA_0349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
ABC98569
UniProt:
Q2JQT7
LinkDB
All DBs
Position
366346..368466
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AA seq
706 aa
AA seq
DB search
MRPEQQRALAYRSGPLGIAAVPGSGKTFILELLIADLILNRGVPPERIGVFTYMRSARSN
LINRINQRLQQAGYPDRFTQAFTLHSLALRVLREVPGPWEELSILEEYEQERLLSRLCRA
WLAHHTHLWEPLIPAEKPHKVVRNRLRFRRSFQQMVRAVISTAKNLRLGPEAIPTTTQGY
LGWAAPIYAAYQAELRRLGKLDYDDLGWQAVELIERDPALRQQVQNWYDYLFEDEAQDSS
PLQEELLRLLSQRTGNLVRVGDPNQSIMGTFTTAEPRLFRAFCQANPQVTLKESSRSAPQ
ILELANRLVDWVNQKHPIPALRTALAPQHICPASAGGLNPPASEGEVVFRRVVGSPEQEL
QEVTRWALAAAQAFPDQTVAILVTTNELGGKALDYLRELGAEQVIDLLRGNPSQRRVLLQ
LKGIIDWLAQPISSARLAAAVDHLADWAGIPRLELGPMLDWIRASLPERLLFPQFGEAPT
LPDSPSWQNLGRLLRILAGWLRAGRSPWPEVLNVIVQSLYRKPEELFVGCYVIDQLEQVL
GSLPEVDWQEIAQELRVILDRRLNNLPSEIFAFNPEPGSITVTTLHRAKGLEWDQVFIPQ
VSAYEFPTYSEERPVGLRFLEDVDMRAEALAQLRQLSRRSCWEQQADSATEQAFLDLAAE
RLRLLYVGITRSKRRLTLSVSSQSRFGEEQSASLVFRVLSRPCEAS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtccagaacagcaacgggcattggcgtatcggtcggggcctctggggatcgcggca
gttccggggagcggcaagacgtttatcctggagctgctaatcgccgatctcatcctgaat
cgcggcgttccaccggagcgcattggggtgttcacctacatgcgttcggcgcgaagcaat
ttgatcaaccgcatcaaccaacgcctgcaacaggcgggctatccggatcgctttacccaa
gccttcaccttgcactcgctggcgctgcgggtgttgcgggaggttcccggcccttgggaa
gagctgtccatcctggaggaatatgaacaggagcgcctgctcagccgtctctgccgcgcc
tggctcgcccaccacacccacctctgggagcccttgatccctgccgagaagccccacaag
gtggtccgaaaccggctgcggtttcgacgcagcttccagcagatggtgcgggcggtgatc
agcacggccaagaatctgcgtctggggccggaggcgatccccacaactactcagggctat
ctgggctgggcggcccccatctatgctgcctaccaagcggagctgcgtcgcctgggcaag
ctggactacgacgacctgggctggcaggcagtggagctaatcgagcgcgacccggccctg
cggcagcaggtgcaaaattggtacgactacctattcgaggacgaggcccaggacagctcc
cccctccaagaagagctgctgcggctgctcagccagcgcaccggcaacctggtacgggtc
ggggatcccaaccaaagcatcatgggcaccttcaccaccgccgagccgcggctgtttcgc
gccttttgtcaggccaatccccaggtgacgttgaaagagtccagccgcagcgccccccag
atcctggagttggccaaccgcctggtggactgggtgaaccagaagcaccccatcccagcc
ctgcgcaccgccctggctccccagcacatttgcccggccagcgctggcggcctaaatccc
ccggccagcgaaggggaggtggtgtttcgccgggtagtcggatccccggagcaggagctg
caggaggtgacgcggtgggccctggcagccgcccaggcttttcccgaccagacggtggcc
attctggtcaccaccaacgagctggggggcaaggccctcgactacctgcgggaactgggg
gcagagcaggtgatcgatctgttgcggggcaaccccagccagcggcgggtgttgctgcaa
ctcaagggaatcatcgactggttggcccagcccatttcctctgcccgcttggccgctgct
gtggatcacctggccgactgggccgggatcccgcgcctggagctggggccgatgctggac
tggatccgcgcctcgctgccggagcggctgctatttccccagtttggggaagcccccact
ttgccggatagcccctcttggcaaaacttgggcaggctgctgcgcatccttgccggttgg
ctgcgggccgggcgctccccttggccggaggtgctcaatgtgattgtccaaagcctctac
cgcaagccggaagagctgtttgtgggttgctacgtcatcgaccagttggagcaggtgctg
ggatccctgcccgaggtcgattggcaggagattgcccaagaattgcgggtgattctggat
cgccgcctcaacaacctgccctcggagatctttgccttcaacccggagccgggcagcatc
accgttacgactctgcaccgcgccaagggcttggaatgggatcaggtgttcatcccccag
gtgtcggcctacgagtttcccacctactctgaagagcgaccggtggggctgaggtttttg
gaggatgtcgatatgagagcagaagccctggcccagttgcggcagctcagccgcagaagt
tgttgggagcagcaggccgactcggccaccgagcaagcctttttggatctggccgcagag
cggctgcggctgctgtacgtgggcatcacccgcagcaaacggcggcttaccctctccgtc
tccagccaatctcgctttggcgaagagcagagtgcatcgttggtgtttcgcgtgttgagc
cgcccttgcgaggcaagttga
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