Synechococcus sp. JA-3-3Ab: CYA_0409
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Entry
CYA_0409 CDS
T00318
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYA_0409 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cya03021
]
CYA_0409 (rpoB)
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_0409 (rpoB)
Enzymes [BR:
cya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYA_0409 (rpoB)
Transcription machinery [BR:
cya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CYA_0409 (rpoB)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CYA_0409 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ABC98628
UniProt:
Q2JX64
LinkDB
All DBs
Position
424423..427824
Genome browser
AA seq
1133 aa
AA seq
DB search
MTQLAVPSPAAPTLPDLVEIQRESFLWFLREGFEEELLSFSPIVDYTGKLELHFLPEYRP
GDPSKGYKINKPRYDPEEAKRRDATYQAQIRVPTRLINKETGEIKDMDVFIGELPLMTDR
GTFIINGAERVIVNQIVRSPGVYYKSELDKNGRRTYSASLIPNRGAWLKFETDKNGLVWV
RIDKTRKLSAAVLLKALGLSDSEIYDSLRHPEFFQKTMEKEGHYSEEEALMELYRKLRPG
EPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAENVRVLTVTDILAVIDYLI
NLEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESENLTPASLV
NPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFAVRDIHPS
HYGRICPIETPEGPNAGLIGSLATHARVNQYGFIESPYYRVENGVVRKDLGMVYLTADEE
DEYRVAPGDVPVDAEGRITADLVPVRYRQEFTTAHPSEVHYVQVSPVQLISVATSLIPFL
EHDDANRALMGANMQRQAVPLLKPDRPYVGTGLEAQAARDSGMVVVSRTSGVVTYVSADE
IVVRPDDGGDPIVYRLQKYQRSNQDTCLNQRPLVYAGDRVVPGQVLADGPATEGGELALG
QNVLVAYMPWEGYNYEDAILISERLVYDDVFTSVHIEKYEIEARQTKLGPEEITREIPNV
GEDALRNLDENGIVRIGAWVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDVRDNS
LRVPNGERGRVVDVRIFTREQGDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNKGIIS
RILPIEDMPYLADGTPVDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPFDEMH
GLEASRLTVEAKLREAREKTGKDWIFNPEGKYCGKIQVFDGRTGEPFDQPVTVGRAYMLK
LVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYILQELLTVK
SDDMVGRNEALNAIVKGKPIPRPGTPESFKVLVRELQSLCLDVSVHKVEVDSDGQTRDVE
VDLMADVSSRHTPSRPTYESVTSEDLSPAAGGTFTLARRSREEDEDREEEDDF
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgacacaattagcagtgccatcccctgccgctcctaccttgcctgacctggtagagatt
cagcgggagagttttttgtggtttttgcgagaagggtttgaagaggagctcctcagcttt
tcccctatcgtcgattacacaggcaagctggagctgcactttctgccggagtaccgccct
ggggatccctccaaagggtacaagatcaacaagccgcgctacgaccctgaggaagctaag
cgacgggatgctacctaccaagcgcaaatccgggtgcccactcgcctgattaacaaagag
acgggcgagatcaaggacatggacgtcttcatcggcgagctgcctttgatgacggatcgg
ggtaccttcatcatcaacggcgccgagcgggtgatcgtcaaccaaatcgtgcgcagcccc
ggcgtctactacaagtcggagctggacaaaaacggtcggcgcacctacagcgccagcctc
atccccaaccggggcgcctggctgaagtttgagaccgacaaaaacggcctggtgtgggtg
cgcatcgacaaaacccgcaagctctcggcggcggtgctgctgaaggccttgggcctgagc
gactcggagatctacgacagcctgcgccaccccgaatttttccaaaaaaccatggaaaaa
gaggggcactacagcgaagaagaggccctgatggagctgtaccgcaagctgcggcctggc
gagcctcccaccgtctccggcggccagcagttgttggaatcccgcttcttcgatcccaag
cgctacgacctgggccgagtagggcgctacaagctcaacaaaaagctcaatctcaacgtg
gcggaaaatgtgcgggtgctcaccgtcacggacatcttggccgtcatcgactacctgatt
aacttggagtacgacatcggccatgtggacgacatcgatcacctgggcaaccgccgcgtg
cgctcggtgggcgagctcttgcaaaaccaagtacgggtgggcctcaaccgcctggagcgg
atcatccgcgagcgcatgacggtctccgagtcagagaacctcaccccggcctcgctggtt
aaccccaagcccttggtggcggccatcaaggagttcttcggctccagccagctctcccag
ttcatggatcagaccaacccgctggcggagctgacccacaagcggcggctgtcggccttg
ggccccggtggcctgagccgggagcgggccggctttgccgtgcgggatatccaccccagc
cactacgggcgcatctgccccatcgaaactccggaaggccccaacgccgggctgatcgga
tccctggccacccacgcccgcgtcaaccagtacggcttcatcgaaagcccttactaccgg
gtcgaaaacggcgtggtgcgcaaggatctggggatggtctacctcaccgccgacgaggag
gacgagtatcgcgtggcgccgggggatgtgccggtggatgccgaaggccgcatcaccgcc
gacttggtgccggtgcgctaccgccaggaatttaccaccgcccaccccagcgaggtgcac
tacgtgcaggtgtcgccggtgcaactgatctcggtggccacctccttgatcccctttttg
gagcacgacgacgccaaccgcgccctgatgggggcgaacatgcagcggcaggcggtgccc
ctgctcaagccggatcggccttatgtgggcacgggtttggaagcccaggcggcgcgggac
tctggcatggtggtggtgtcgcgcaccagtggcgtggtgacctatgtttccgccgacgaa
atcgtggtgcggccagacgacggcggggatccgattgtttaccgcttgcagaagtaccag
cgctccaaccaagatacctgtctcaaccagcgccctcttgtctacgcgggggatcgggtg
gtgcccgggcaggtgctggcggacggcccggcgaccgagggaggcgagctggccttgggc
caaaacgtcttggtggcctacatgccctgggagggctacaactacgaagatgccatcttg
atcagcgagcggctggtctacgatgatgtcttcacctcggtacacatcgagaagtacgag
atcgaagcccggcagaccaagctagggccggaagagatcacccgcgagattcccaacgtg
ggggaagatgccctgcgcaacctggacgaaaacggcattgtgcgcattggggcttgggtg
gaagccggcgatattttggtgggcaaggtcactcccaaaggggagtcggatcaaccgcca
gaggagcggctgttgcgggccattttcggcgagaaagctcgcgacgtgcgcgacaactcg
ctgcgggtgcccaacggcgagcgcggacgggtggtggatgtacgcatctttacccgcgag
cagggggatgagctgcctccgggcgccaacatggtggtgcgggtttacatcgccctcaag
cgcaaaattcaagtgggggacaagatcgcgggccgtcacggcaacaagggcatcatctcc
cgcatcttgccgatcgaggacatgccctacctggcggatggcacgccggtggatgtggtg
ctcaaccccttgggggttccctcccgcatgaatgtgggccaggtgtatgagtgcctcctg
ggctgggcggcagaacacttgggggtgcgctttaagctgatgcccttcgacgagatgcac
ggcctggaagcctcgcggttgacggtggaggccaagttgcgggaggcccgtgaaaaaacc
ggcaaagactggatcttcaacccagaaggcaagtactgcggcaagatccaggtgttcgat
ggtcgcactggcgagcctttcgaccagccggttacggtgggccgcgcctacatgctgaag
ctggtgcatttggtggacgacaagatccacgcccgctctaccggtccctactcgctggta
acccagcagcccctggggggtaaggcgcagcagggtggccagcgctttggcgagatggag
gtgtgggctttggaggcgtttggagcggcctacatcttgcaggagctgctcaccgtcaag
tcggacgatatggtggggcgcaacgaggccctcaacgccatcgtcaagggcaagcccatc
cctcgacccggcacgccggaatctttcaaggtgttggtgcgggagctgcagtccctctgc
ctggacgtgtctgtccataaggtggaggtggacagcgacggccagacccgcgatgtggag
gtggatctgatggccgatgtctccagccgccacaccccctcgcggcccacttatgaatcc
gttacatccgaggatctttctccagcggcaggaggaacctttaccttagccaggcgcagc
cgcgaggaagacgaagacagggaggaagaggacgatttttga
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