Synechococcus sp. JA-3-3Ab: CYA_0410
Help
Entry
CYA_0410 CDS
T00318
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYA_0410 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cya03021
]
CYA_0410 (rpoC1)
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_0410 (rpoC1)
Enzymes [BR:
cya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYA_0410 (rpoC1)
Transcription machinery [BR:
cya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CYA_0410 (rpoC1)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CYA_0410 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
ABC98629
UniProt:
Q2JQT5
LinkDB
All DBs
Position
427924..429807
Genome browser
AA seq
627 aa
AA seq
DB search
MAKTEQRFDYVKIGLASPERIIEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPVKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGI
PSHIATLLDMPLRDVEQVVYFNAYVVVDPGNAPNLSYKQLLTEDQYLEIEDQMYEEGSEL
QLPENWAMIGAEAIERLLKDIDLEKEAEQLREEIASARGQKRARLIKRLRVIDNFIATGA
RPEWMVLRVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEIMAPEIIV
RNEKRMLQEAVDALIDNGRRGRMVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGR
SVIVVGPNLRMHQCGLPKEMAIELFQPFVIHKLIKRGIVNNIKAAKKLIQSNDPQVWDVL
EDVIDGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPL
SLEAQAEARLLMLATNNILSPATGAPIITPSQDMVLGCYYLTADNPHAPDLGDRYFASLE
DALIAYDRGVIGLHSKIWVRYSGPMELGKEEKESEPQIIEEPGGTRLKITNYRRIREDRD
GNVISQYIRTTAGRIIFNKTVQDILSA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacggagcaacgctttgactatgtcaagattgggctggcttctccggagcgg
attatagagtggggccagcgcaccctgcccaacggccaagtggtgggagaagtcaccaag
ccggagaccatcaactaccgaaccctcaagccggagatggatggtctcttctgtgagcgc
atcttcgggccggttaaggactgggagtgtcactgcggcaagtacaagcgagtgcggcat
cgcggcattgtctgcgagcgctgtggggtggaggtgaccgagtcgcgggtgcgccgccat
cgtatgggctacatcaaactggccgccccggtcacccacgtttggtacctgaaagggatc
cccagccacatcgccacgctgttggacatgccgctgcgggacgtggagcaggtggtgtac
ttcaacgcctacgtggtggtggatccgggcaacgctcccaacctctcctacaagcagttg
ctgaccgaggatcaatacctggagatcgaggatcagatgtacgaggagggatccgagctg
caactgccggagaactgggccatgatcggggcggaggccatcgaacgcctgctcaaggat
atcgacctggaaaaagaggcggagcagttgcgggaggagatcgccagcgcccgcggccag
aagcgggcgcgcctaatcaagcggctgcgcgtgatcgacaacttcatcgccacgggagcc
cggccagagtggatggtgctgcgggtgctgccggtgatcccgcccgatctgcgcccgatg
gtgcagttggatggggggcgctttgccaccagcgacctcaacgatctctaccgtcgggtg
atcaaccgcaacaaccgcctggcgcggctgcaggagatcatggcgccggagatcatcgtg
cgcaacgagaagcgtatgctgcaggaggcggtggacgccctgatcgacaacggtcggcgg
gggcgcatggtggtgggggccaacaaccgtcccctcaagtccctctccgatatcattgag
ggcaagcaggggcgtttccggcaaaacctgctcggcaagcgggtggactactctgggcgt
tcggtgatcgtggtggggcccaacctgcgcatgcaccagtgtggcttgcccaaagagatg
gccatcgagctgttccagccctttgtgatccacaagttgatcaagcggggcatcgtcaac
aacatcaaagccgccaaaaagctgatccagagcaatgacccgcaggtttgggacgtgctg
gaggacgtaatcgacggccacccagttttgctcaaccgtgccccaacgttgcaccgcctc
gggatccaggcttttgagccgatcctggtggaggggagggcgattcagctccaccccttg
gtctgcccggctttcaacgccgacttcgacggcgaccagatggcggtgcatgtgcctctc
tccttggaagcccaggcggaggcacgcttgctgatgttggccaccaacaacatcctctcc
ccggccacaggcgctccgattattactcccagccaagacatggtgttggggtgctactat
ctgacggcggacaatccccacgcccccgaccttggcgatcgttattttgccagcctggag
gacgccctcatcgcctacgaccgcggcgtcatcggcctgcacagcaaaatctgggtgcgc
tacagcggcccgatggagttgggcaaagaggaaaaagagtcggagcctcagattatcgag
gagccgggcggcacccgcctcaagatcaccaactaccgccgcatccgcgaggatcgggac
ggcaacgtgatcagccaatacattcgcaccacggcgggccggatcatcttcaacaaaacg
gtgcaagatattttgtctgcttga
DBGET
integrated database retrieval system
