Synechococcus sp. JA-3-3Ab: CYA_0561
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Entry
CYA_0561 CDS
T00318
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cya03032
]
CYA_0561 (topA)
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_0561 (topA)
Enzymes [BR:
cya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CYA_0561 (topA)
DNA replication proteins [BR:
cya03032
]
Prokaryotic type
DNA Topoisomerases
CYA_0561 (topA)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CYA_0561 (topA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Methyltransf_4
MarR_2
DUF6429
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ABC98777
UniProt:
Q2JWS9
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Position
complement(572482..575142)
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AA seq
886 aa
AA seq
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MPKLVIVESPTKARTIRGFLPAGYEVQASMGHVRDLPESASDIPEEVKGEEWSRLGVNVH
ANFEPLYVIPKDKRKVVKQLKEALKKADELILATDEDREGESISWHLQQVLQPKVPTRRM
VFHEITREAIQEALQNCREVDEQLVRAQETRRILDRLVGYTLSPLLWKKIAPKLSAGRVQ
SVAVKLLVDRERERRAFKKATYWDLKADLQPRTASQAASFPAELVSLGGKRLASGQDFDP
STGQLIAGRDVVLLDQAQAEALRDRLLGKAWVVSSVEERPSTRKPAPPFTTSTLQQEANR
KLRLSAQQTMRIAQKLYEEGYITYMRTDSVHLSEQAIRAARACVESMYGKEYLSPEPRQY
TTKTKGAQEAHEAIRPAGSEFRLPSQTPLTGQELALYDLIWKRTVASQMAEARQTHTIVL
IAVDDAVFRASGKRIDFPGFFRAYVEGSDDPEAALEDREVHLPLLRQGDPLSCLQLEPVG
HETQPPPRYTEASLVKVLESEGIGRPSTYATILNTIMSRGYVRSMGNALVPTYTAFAVTE
LLEKYFPNLVNTRFTAEMEQTLDDIASGQADWLPYLRHFFLGEQGLEGQVKARELEIDSG
LARSIYLENLPVKIGIGPYGPYVSVETESGEVRANLPEDIPPADLSAEHIEELIRRKQEG
PKPIAFHPETQEPVYVIPQGPYGPYVQLGEVSEENKKPKRTSLPRGLKPEQVTPEIALGL
LSLPRTLGEHPESGKKVQAGIGRFGPYVVCDGDFRSLPADEDVLTISLERALELLAQPKK
GRGRGSAKPLRELGSHPEDGEPVTLHDGPYGLYVKHGKVNASLPKDLSPEAVTLEMALEL
LAEKEGKGQAKASRPAAAKRAKKAEAAPQKQQSHPTLLEAVSKARA
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagctggtcattgtcgaatctcccaccaaagcccgtaccatccgcggcttcttg
cccgccggctatgaggtgcaagcctcgatgggacatgtacgcgatctgccggagtcggcc
tctgacattcccgaagaggtgaagggagaagagtggagccgtctcggggtcaatgtccac
gccaacttcgagcctctctacgtgatccccaaggacaaaagaaaggtagtcaaacagctg
aaggaggcgcttaagaaagccgacgagctaattctggccactgacgaagaccgggagggg
gaaagtatcagttggcacctgcaacaggtgctgcagcccaaggtgcccacccgccgcatg
gtgttccacgagatcacccgcgaggccattcaggaggcgctgcaaaattgccgtgaggtg
gacgagcaactggtgcgggcccaagagacgcgccgcatcttggatcgcctggtgggttac
actctgtcgccgctgctgtggaaaaaaattgcccccaaactctcggcaggtcgggtgcag
tcggtggcggtgaagctcttggtggatcgggagcgggagcgtcgcgcctttaaaaaagcc
acctactgggatctgaaagcggatttgcaaccgaggacagcaagccaagcggcctctttc
ccggcagagctggtgagcctgggcggcaaacgtctggccagcgggcaagacttcgatccc
agcaccgggcagctcatagccggacgggatgtggtgctgttggatcaagcccaggccgag
gccctacgggatcgcctgctggggaaagcttgggtcgtcagctcggtcgaagaacgcccc
tccacccgcaagcccgcccctcccttcaccacttccacgctgcaacaggaggccaaccgc
aagctgcgcctgtcggctcagcagacgatgcgcatcgcccaaaagctctacgaagagggc
tacatcacctacatgcgcaccgactcggtacacctgtcggaacaggccatccgcgccgcc
cgcgcctgcgtggagtcgatgtacggcaaggagtacctcagccccgaacctcggcagtac
accaccaaaaccaaaggggcgcaagaagcccacgaggccattcgtcccgccggctcggag
tttcgcctgcccagccaaacccccctcacagggcaggagctggccctctacgacctgatc
tggaagcgcactgtcgccagccaaatggccgaggcgcggcagacccacaccatcgtgctc
atcgcggtggacgatgcggtgtttcgggccagcggcaagcgcattgactttcccggcttc
ttccgcgcctatgtggagggatccgacgacccagaggcggctttggaagatcgggaagtg
catctgcccctgttgcggcagggggatcccttgagctgcctgcagttggagccggtgggc
cacgaaacccagccgccgcctcgctatacggaagcatccttggtcaaggtgttggaaagc
gagggcattggccgccccagcacctacgccaccatcctgaacaccatcatgagccgcggc
tacgtcaggtcgatggggaacgccctcgtgcccacctacaccgcctttgcggtgaccgag
ctgctggaaaaatactttcccaacctggtgaacacccgcttcactgccgagatggagcaa
accctcgatgacatcgcttctggccaggcagactggttgccctacttgcgccatttcttc
ctgggcgagcagggcctagaaggccaggtgaaggcgcgcgagttggaaatcgactccggc
ctggcccgctccatttacctggagaacctgcccgtcaagatcggcatcggcccctacggc
ccctatgtgtcggtagagactgaatcaggagaggtgcgcgccaacctgccggaggatatt
ccccccgccgatctcagcgccgaacacatcgaggagctcatccggcgcaagcaggaaggt
cccaagcccatcgccttccacccggaaacccaagagccggtctacgtaattccccagggt
ccctacggcccctatgtgcagttgggagaggtgtcggaggagaacaaaaagcccaagcgc
acctccctgcccagagggctgaagccggagcaggtcacccctgagattgccctggggctg
ctcagcctgccccgcacgttgggggagcacccggaatcggggaaaaaggtgcaggccggc
attggccgcttcggcccctacgtggtctgcgacggggatttccgctcgctgcctgccgat
gaggatgtgctgaccatcagcctagagcgggcgctagagctgctggcccagcccaaaaaa
ggccgtgggcgcggctcggccaagcccctgcgcgagctgggatcccatcctgaggatggc
gagccggtcaccttgcacgacggcccctatggtctgtatgtcaagcacggcaaggtaaac
gcctcactgcccaaagatctctccccggaagccgtgacgctggagatggcgctggagttg
ctggcggaaaaagaaggcaagggccaggcaaaagccagccgaccagcggcggccaagcgg
gccaagaaggctgaagctgctccccagaagcaacaatcccatcccaccctgctggaggct
gtctccaaagctcgggcttga
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