Synechococcus sp. JA-3-3Ab: CYA_1120
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Entry
CYA_1120 CDS
T00318
Symbol
recJ-1
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03410
Base excision repair
cya03430
Mismatch repair
cya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CYA_1120 (recJ-1)
03430 Mismatch repair
CYA_1120 (recJ-1)
03440 Homologous recombination
CYA_1120 (recJ-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_1120 (recJ-1)
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CYA_1120 (recJ-1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CYA_1120 (recJ-1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CYA_1120 (recJ-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
LDcluster4
ThiG
Glycolipid_bind
Motif
Other DBs
NCBI-ProteinID:
ABC99309
UniProt:
Q2JVD4
LinkDB
All DBs
Position
complement(1146623..1148851)
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AA seq
742 aa
AA seq
DB search
MEYRWDLLPTPPQFDPELSREYGKYAAKVLALRGLHSREQARAFVDPNQYSPTPAGSLPD
LERAVARLLQARKRGETLCIWGDFDCDGVTATSLLLSALQTLGFRVQFTLPLRSTEGHGL
NPQRLQQVLDQGCQVLLTVDCGIGNAAEIALAQAQGMDVIVTDHHALPDPLPPAYAVVNP
LRLPEEHPLRFLPGVGVAYKLAEALYQALGIPGVEEYLDLVAVGIVADVAVLQRECRYLV
QRGLPVLANTQRPGLRALLDWVSNSQSSGTPTAQDIAFRLAPKLNAIGRWDDASLAVELL
TTSDPQRAQTLVEHFVALNEECRQLTQQVLQEASQQVESLDLARERAIVLAGSGWNPGVL
GIAAARLAEQYGCPTVLIAKDERTGRGYGSGRSIPGVNLVEAIEAVRPLLLGGGGHPMAA
GIQVDLSCLAAVQLALRRELAARVGPDRQARALAVEIVIDWERLASQGRDRVAELDEVYR
QLQLLQPFGHGNPNPVVALMNVRRGSVRLRASQNGRHLKFELGSRALWFWEAGEELERWQ
ACQALDIALQLEAEQPWQGKVLAVRPSGDWQAPTVSAPSLRIQDYRQRPLPDSLQEVFRY
DGQALPLEQDFLPSAKTALLLARWPWLPANLAQLLQQVQPQTLILAASGHHWKRLPHQIA
RLQELGRTGQWDPHVLAATTGLPWQWLAELEGPEQIPTRLLGRIQESQAFHRWLDEASPT
QIAQLCQRLLRPDPLPAVVSPK
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggaataccgctgggatctgctgcccaccccgcctcaatttgatccggagctgagccga
gagtacggcaagtatgcggccaaggtgctggctctgcgggggttgcacagccgagaacag
gcgcgggcttttgtcgatcctaatcagtattctcccacgccagcgggatccctgccggat
ctggagcgggcggtggcgcggctgttgcaggcaagaaaaagaggagaaaccctctgcatt
tggggagacttcgactgcgatggcgttaccgccaccagcctcttgctctcggcgctacaa
accttgggcttccgagtccagttcactctaccgctgcgcagcaccgaagggcatggcttg
aaccctcagcggctgcagcaggtgctggatcaaggctgccaggtgctcctgacggtggat
tgcggcataggcaatgctgccgagattgctctggcccaagcccaagggatggacgtgatc
gtgacggatcaccacgccctgccggatcccttgccccctgcctatgcggtggtcaacccg
ctgcgcctgccagaggaacacccgctgcgctttctgccgggggtgggggtggcctacaag
ctggcggaggccctctaccaagcgctggggatccctggtgtagaagagtacctggatctg
gtggcggtggggatcgtggccgatgtggcggtgttgcagcgggagtgccgctacctggtg
cagcggggcctgcccgtgctggccaacacccagcgtccggggctgcgggctcttttggat
tgggtgagcaacagccaatcctcaggaacgccgacagcccaggacatcgcctttcgcctt
gcccccaagctgaacgccattggtcgctgggacgatgccagcctagcggtggagctgttg
accacctcggatccgcagcgggcccagacgctggtggagcatttcgttgccctcaatgag
gagtgtcggcaactcacccaacaggttctgcaagaggccagccaacaggtggagagcttg
gatctggcgcgggagcgggcaattgttttggccggaagcggctggaatccgggggttttg
gggatcgccgcggcgcgcttggcggagcagtacggttgcccgacggtgttgattgccaaa
gacgagaggacgggacggggctatggttcgggccgctcgattccgggggtgaacctggtg
gaggccatcgaggctgtgcgtcccctcttgctggggggaggcggccaccccatggccgct
gggatccaagtggatctgtcctgcctggccgccgtacaactggctttgcggcgggagctg
gccgcacgggtcggcccggatcgccaagctcgcgccttggcggtggagattgttatcgat
tgggagcggttggcctctcagggccgggatagggtggcagagctggacgaggtgtatcgg
cagttgcagcttctgcagccctttggccacggcaaccccaaccctgtcgtagccttgatg
aacgttcgccgcggcagcgtcaggctgagggcttcccagaatggccgccacctgaagttt
gagctgggatcccgtgccctctggttttgggaagccggcgaagagctggagcggtggcaa
gcatgccaggccttggacatcgccctgcagttggaagccgagcagccctggcagggcaaa
gtgctggcggtgcgcccctctggcgactggcaggcgcccaccgtttccgcccccagcctt
cggatccaggattaccggcaacgccccctgccggattccctccaagaagtcttccgctac
gatgggcaggcccttcctctcgagcaagacttcctcccgtcggcaaaaacagctctgctg
ctggcccgctggccctggctgccggcaaatctagcccaactgctgcagcaggtgcagccg
caaacgctgatcctggccgcttctggtcatcactggaagcgcctcccccaccaaatcgcc
cgactccaggaattggggcggacgggacaatgggatccccatgtcctggcggcgacaacc
ggcttgccctggcagtggctggcggaattggaggggccggagcagatcccaacacggctg
ctgggccgcattcaagaatcccaagcttttcaccgctggctggacgaagccagccccacc
cagatcgcccagctctgtcagcggctgctgcgaccggatcccctgccggcagttgtttct
ccgaagtag
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