Synechococcus sp. JA-3-3Ab: CYA_2410
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Entry
CYA_2410 CDS
T00318
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cya
Synechococcus sp. JA-3-3Ab
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CYA_2410 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cya03021
]
CYA_2410 (rpoD)
Transcription machinery [BR:
cya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CYA_2410 (rpoD)
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Ortholog
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GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ABD00534
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Position
complement(2418526..2419740)
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AA seq
404 aa
AA seq
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MAQAKELVQSGHTALLEPDLESSSSIPLDADNEVDPLETELDASDTDAFDEDDEDDEESL
EEDADAAAAAAKGRSKRKAASKKKPYTDDSIRVYLQEIGRIRLLRADEEIELARKIADLL
ELERAREAVFQRMGLWSDPEEVPETLWAEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLV
VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS
RTIRLPVHLYETISRIKKVTKQLSQELGRRPTEEEIATRMEITIEKLRFIAKSAQLPISL
ETPIGKEEDSRLGDFIESEGETPEERVAKVLLREDLESVLETLTPRERDVLKLRYGLDDG
RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYIR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagcaaaggaattggtgcagtctggtcatacggctcttctcgaaccggatctg
gaaagttcatcctccatccctctggatgcggacaatgaggtggatcccctcgagacggaa
ctggatgccagtgacactgatgcttttgatgaggatgatgaggacgacgaagagtccctc
gaggaggatgccgatgctgctgccgccgctgccaagggccgttccaagcgcaaagcggcc
agcaagaaaaaaccctacaccgatgactccatccgcgtctatttgcaggaaatcgggcgt
atccgcctgttgcgggcagatgaagaaattgagctagcccgcaaaattgccgacctgctg
gagctagagcgggctcgcgaggccgttttccagcgtatgggcctctggtccgacccagag
gaggtaccggagacgctgtgggcagaagaagtgaagatgtccctgcccgaattccggcgg
cgcttgcatcgggggcgacgggccaaagaaaagatggtgcagtccaatctgcggctggtg
gtctccattgccaagaaatacatgaaccggggcctgtcgtttcaggatctcatccaagag
ggatccctaggtctgatccgggcagcggaaaagtttgaccacgagaagggctacaagttt
tccacctatgccacttggtggattcgccaggccatcacccgcgccattgccgaccaatcg
cgcaccattcgcctgccggttcacctttacgagaccatctcccgcatcaagaaggtcacc
aagcagctttctcaggagctgggccgcaggccgaccgaagaggagatcgccacccgcatg
gagattaccatcgagaagttgcgcttcatcgccaagtcggctcagcttcccatctctctg
gagactcccatcggtaaagaagaggattcgcggctgggcgacttcatcgagtcggaaggg
gaaacccccgaggagcgggtggccaaggttttgctccgagaggatctggaaagcgtgctg
gaaactcttaccccccgcgagcgggatgtgttgaagctgcgctacggcctagacgatggc
cgcatgaaaaccctggaggagatcggccagatcttcaatgtgacccgcgagcggatccgg
cagatcgaggccaaggcgctgcgcaagctgcgccaccccaatcgcaacagtgtgttgaaa
gagtacatccgctag
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