Synechococcus sp. JA-3-3Ab: CYA_2537
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Entry
CYA_2537 CDS
T00318
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cya03016
]
CYA_2537
Enzymes [BR:
cya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CYA_2537
Transfer RNA biogenesis [BR:
cya03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CYA_2537
Prokaryotic type
tRNA splicing ligases
CYA_2537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABD00657
LinkDB
All DBs
Position
2556041..2557471
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AA seq
476 aa
AA seq
DB search
MDIKKLERVDETVWRIPPKGKMRAPVLIFADEELIREMDDKVAEQASNVTTLPGIVGACY
VMPDAHWGYGFPIGGVAAFDAEEGGVISAGGVGFDISCGVRTLRTGLTREEVEEAAEPLA
NALYASVPVGLGSRSKISLSDKEMEAMLEGGAEWAVAQGYGKKEDLERIEEHGRMRGAMP
SEVSAYARERQRREMGTLGSGNHYLEVQVVDEIYDPKAAESFGLKQGEVVITIHCGSRGL
GHQIGTEYLKKMQQAAKEHGIELPDRELACAPLKSKVGQSYLGAMRAAINCALANRQIIT
HWVRQVFAELFPKAELDLIYDVSHNTCKEETHVIEGKKRRLFVHRKGATRAFGPGHPEIP
QAFRSIGQPVIIGGSMGTASYILVGTEQSEALSLSSACHGAGRAMSRNQALKAWTGQEIV
EQLRRRGVIVRSPSLRGVAEEAPQAYKNVDKVVRAADQAKIAKLVARLRPILCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaagaaacttgagcgtgtagatgagactgtctggcgcattcctcctaaaggc
aaaatgcgtgccccagtcttgatctttgccgatgaggagttaatccgggagatggacgac
aaagtggccgagcaggccagcaacgtgaccaccttgccagggatcgtgggagcctgctac
gtgatgccagatgcccactggggctatggttttcccatcggtggggtggctgctttcgat
gcggaagaagggggggtgatttccgccggcggcgtgggctttgacatctcctgcggcgtg
agaaccttgcggacggggctgacgcgcgaagaagtggaggaagcggcagaacccttagcc
aatgccttgtatgcgagcgtaccggtagggcttggcagccgcagcaagatctccttgagc
gacaaagagatggaagccatgctggaaggcggagcagaatgggctgtggctcaaggctac
ggcaagaaagaggatctggagcgcatcgaagaacatggccgcatgcggggagcaatgccg
agcgaagtctccgcctatgcgcgtgagcgccagcggcgggagatggggactctaggctca
ggtaaccactacctcgaagtccaggttgttgacgagatctacgatcccaaggctgccgag
agcttcggcctcaagcagggggaagtggtcattactattcactgcggctcccggggcttg
ggtcaccagattggcacggagtatttgaagaagatgcaacaggcggctaaagagcacggc
atagagctgcctgaccgcgagctggcgtgtgcgcccttgaagtccaaagtggggcaaagc
tacctgggagcaatgcgggcagctatcaactgcgccttggccaaccgccagatcatcacc
cactgggtgcgccaggtattcgccgagctttttcccaaggctgaactcgaccttatctac
gacgtctcccacaacacctgtaaggaggagacgcacgtgatagaggggaaaaaacgtcgc
ctgttcgtccaccgcaagggggcaacgcgcgcttttgggcctggccacccagagatccct
caggctttccgctctatcggtcagccggtcatcatcggcggctccatgggcacggcctcc
tacattctggtcggcacggagcaaagtgaggccctttccctctcctcggcctgccacggc
gccggaagggcgatgagtcgcaaccaagctctcaaagcctggacagggcaggagatcgtc
gaacaactgaggcggcgcggcgtcatcgtccgcagcccttctttgcggggggtagccgaa
gaagcgccccaggcctacaaaaacgtagataaagttgtgcgcgctgccgaccaagccaag
atcgcgaaactcgtagcgcgcctaagacccattctgtgtatcaagggctag
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