Synechococcus sp. JA-3-3Ab: CYA_2628
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Entry
CYA_2628 CDS
T00318
Name
(GenBank) putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cya
Synechococcus sp. JA-3-3Ab
Pathway
cya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYA_2628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cya03019
]
CYA_2628
03400 DNA repair and recombination proteins [BR:
cya03400
]
CYA_2628
Enzymes [BR:
cya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYA_2628
Messenger RNA biogenesis [BR:
cya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYA_2628
DNA repair and recombination proteins [BR:
cya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CYA_2628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABD00742
UniProt:
Q2JRK9
LinkDB
All DBs
Position
2645144..2646559
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AA seq
471 aa
AA seq
DB search
MALQDWQQVQSALKQYWGYEALRPPQDQVIRALLEKRDALVVLPTGFGKSLCFQLPALLQ
TGLTLVVSPLIALMEDQVQDLWRRRLPAACLHSELDPALRKRVLRALEGNRLRLLYLGPE
TLFSPPVWKRLQQVSLNGLIVDEAHTLVHWGGSFRPDYPRLGLVRPALGQPAFPIAAFTA
TADPETLSRLRHILKLRDPECIRADPLRANISLNVEVAWSPADRRRRLLRFLVENPGSGL
VYVRTRRDGEELAEWLGRHHQKTAAYHGGLEAGSRRRLERAWLEGELRFLVCTNAFGMGV
NKPDVRWVLHFHPPPNLMDYLQEVGRGGRDGGPCRALMLVSEPTGLLDPTDRQRQAYFYS
QQERLLAQARRLLTTLPPQGSYADLPPGETRVALGLLQEMGCLHWPDPFHFQVLHRHWQP
PPRQDPWRGMDDLIHSRSCRWQVILRHFGYPENQPGLPCGTCDRCRAAQRR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtggctttgcaggattggcagcaggttcaatctgccctcaagcagtactggggctacgag
gcgctgcgcccccctcaggatcaggtgatccgcgccttgctggagaagcgggatgcccta
gtagtgctgccaacgggcttcggcaagtccctgtgttttcaactgccggccttgctgcag
acaggtctgaccctggtggtctcgcccctgattgctttgatggaagaccaagtgcaggat
ctctggaggcgccgtctgccggcagcctgtctgcacagcgagctggatccggctttgcgc
aagcgggtgttgcgggctttggaagggaaccggctgcgcctcctgtatctagggccggaa
accctctttagcccgccggtctggaagcggctgcagcaggtgtccctcaacggcctcatc
gtcgacgaggcgcataccttggtgcactgggggggatccttccggcccgactacccccgt
ctgggattggtgcgccctgccctgggccagcctgcttttcccatcgccgcttttactgcc
accgccgatcccgaaaccctcagccgcctgcgccacatcctcaagctgcgggatccggag
tgcattcgcgccgatcccctgcgggccaatatctccctcaatgtggaggtggcctggagc
ccggcggatcgccgtcggcgtctgctgcgttttctagtcgaaaaccccggctcgggcctg
gtgtacgtgcgcacgcggcgggatggggaggagctggccgagtggctgggccgccaccac
caaaaaaccgctgcctaccacggcggcctagaagcaggatcccgccggcgcttggaacgg
gcctggctggagggcgagctgcgctttttggtctgtaccaacgccttcggcatgggcgtc
aacaagccggacgtgcgctgggtgctgcactttcacccgccccccaatttgatggactac
ctgcaggaggtggggcggggtgggcgggatggcggcccctgccgggccctgatgttggtc
tcggagccgacgggcctgctggatcccaccgatcgccagcgccaagcctatttctattcc
cagcaggagcgcctgctggcccaggcgcggcgtttgctgacaactctgcccccccaggga
tcctatgccgacttgccccccggggagacgcgggtggccctgggcctgctgcaggagatg
ggctgtctgcactggccagatccctttcacttccaggtgctgcaccgccactggcagccg
ccgccgcggcaggatccctggcgggggatggacgacctcatccacagccgcagctgtcgc
tggcaggtgatcctgcggcattttggctaccctgagaaccagcccggcctgccctgcggc
acctgcgatcgctgccgggctgcccaaaggcgttga
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