Synechococcus sp. JA-2-3B'a(2-13): CYB_0008
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Entry
CYB_0008 CDS
T00319
Name
(GenBank) type II DNA topoisomerase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyb03032
]
CYB_0008
03400 DNA repair and recombination proteins [BR:
cyb03400
]
CYB_0008
Enzymes [BR:
cyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
CYB_0008
DNA replication proteins [BR:
cyb03032
]
Prokaryotic type
DNA Topoisomerases
CYB_0008
DNA repair and recombination proteins [BR:
cyb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CYB_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
DUF4763
Sec2p
Motif
Other DBs
NCBI-ProteinID:
ABD01010
UniProt:
Q2JQA2
LinkDB
All DBs
Position
complement(7143..9602)
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AA seq
819 aa
AA seq
DB search
MIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA
RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL
AELSHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHN
LGEVVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVA
RFEEIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIR
VVVELKREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATL
NRMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAE
TILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDP
RRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQRELGE
DVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVATFTL
DPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSV
VLATSGGRVLRLDVQQIPLMGRAAMGSPALRLGRTERIVGMALVPSQGILVLASRLGYLK
RLSLEEIPILERGQVGAPAFHFSDRGDVLVGLVGLPPELERPSHLQLDVITESEQVYSFS
PAEIPLQSRSGGGSLLVKGERVRELRLFWPQWLPEGDVG
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtgattgtaaccgatttgcagggggagatgcagcgctcctacctggaatacgccatgagc
gtgatcgtggggcgggccttgccggatgtgcgggatggcctcaagccggtacaccgccgc
atcctctacgccatgcacgagctgggcctgacgccggatcgcccctaccgcaaatgcgca
cgggtggtgggggatgtgctggggaaatatcacccccacggggatcaggcagtttatgac
gcgctggtgcgcatggtgcaagacttttccagccgctatcccctggtggcgggacacggc
aacttcggctctgtggatgatgacccgccggcggctatgcgctacacggagtgccggctg
gcggagctgagccacacagcgcttctggagcaggtgtcggaagagatcgtcgatttcatg
cccaatttcgacggatcccaggcggagcccaccgttctcccggcccgattgcccattttg
ctgctcaacggctcttccggcattgccgtgggcatggccaccaatatcccaccccacaac
ctgggggaagtggtggatggcctgttggctttgatcgaccatcccgacctcagccctgag
gaactgttgcggtggatcccagggccggattttcccaccggcggccaaatcttagacacc
caagggatccgcgcagcctacctcaccgggcgcggttccatcaccctgcggggggtagcc
cgatttgaggagatccagccgggcaaaggacgccaccggcggcctgctctagtcatcagc
gagtttccctatcaggtgaacaaagccgcctggatcgaaaaagtggccgagctggccaac
caagaccgcatcagcggcatcgccgatctgcgggatgagtcggatcgcagcggcattcgc
gtggtggtggagctgaagcgagaggccaacccacaggcggttttgcagcagttgtataag
ctcacccctttgcaaagcaactttggagccatcctgctggctttggtgaacggggaaccg
cggcagctgagcctcaaagagatcctgcagcactttttgcaatttcgcgaggccaccctc
aaccggatgttccgtgccgaactgcagcaggtgcagcgcaaggcggaagaggtggcagga
atgttgctggcgttggcggatctggagggggtgatcgagctgctgcggcaagcgcccgat
ggcaccacggccaaagcccaattgcaaactcgcctgggctgtaccccccagcaggcagag
acgattttggccatgcctctgcgtcgcctgacgggattggagcgggaacggctgcaccag
gaacacgcccagttgcagacccgcatcgaagaactgcaggggctactcagcgaccgccgc
aagctcttgaattatttgaaaaaagagctgcgacacctgaaaaagaccttcggggatccc
cggcgcacccagatcctctcagcctcggagctggaagcggaagtggcccaaatccccagc
ggcgaagagacggaagagacccacttcttgctgcaattcacccgcaagggctatgtgcgc
cgcctgcctctgcctagccgtcgctcccgcagcaacccggcgcaacgggaactgggggaa
gatgtgctggtcggcctggaatgcgtcacgctggagcaggaaatcttggtgctcaccgcc
ggcggcaaagctttcaccctgcccatcgcagggatccccctcagcactgggtcctcacgg
ggggtgcctctggttacccttctccccaaccctgagccgatcgtcgccaccttcacgttg
gatccggatccgggcaaggcaagtttggtggtgctcagccggcaggggcggatcaagcgg
ctggccctggcagagctaatgggcctcacccaacggggatccaccgtcctcaaactaaag
gagggagatgagctgggctgggcagccctttgggatcccgaccaccaaggctacagcgtc
gtcctggctacttcagggggacgggtgctgcggctggatgtccaacagattcccctgatg
ggtcgggcggctatgggatcgccggccctgcgcctggggcgcaccgagcgaatagttggt
atggcgctggtgccctcccaagggatcctggttctggccagccggttgggctatctgaag
cgcttgtctctggaggagatccccatcttggagcggggtcaagtgggcgcgccggccttt
cacttctccgaccgaggggatgtgctggtgggcttggtgggtctcccccccgagctggag
aggccttcccatctgcaactggatgtgatcacggagtctgaacaggtgtactccttctct
cctgccgagatcccgctgcaaagccgctccgggggcggatccctcctggtcaaaggggag
cgggtcagggagttgcgcctgttctggccgcagtggctgccggaaggcgatgtgggatag
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