Synechococcus sp. JA-2-3B'a(2-13): CYB_1106
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Entry
CYB_1106 CDS
T00319
Symbol
recJ-2
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Pathway
cyb03410
Base excision repair
cyb03430
Mismatch repair
cyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CYB_1106 (recJ-2)
03430 Mismatch repair
CYB_1106 (recJ-2)
03440 Homologous recombination
CYB_1106 (recJ-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyb03400
]
CYB_1106 (recJ-2)
DNA repair and recombination proteins [BR:
cyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CYB_1106 (recJ-2)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CYB_1106 (recJ-2)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CYB_1106 (recJ-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
LDcluster4
ThiG
Motif
Other DBs
NCBI-ProteinID:
ABD02083
UniProt:
Q2JMF8
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All DBs
Position
1140273..1142549
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AA seq
758 aa
AA seq
DB search
MEYRWELLPTPPQFNPQLSREYGKYAAKVMALRGLHTWEQAQAFVDPEHYSPTPPASLPD
LERAVARLLQAREREETLCIWGDFDCDGVTSTSLLLSALQPLGFRVQFSIPLRSTEGHGL
NPQRLQQVLAQGCQVILTVDCGVGNAAEIAMAQAQGVDVIVTDHHMLPDPLPAAYAVVNP
LRLPAEHPLRFLPGVGVAYKLAEALYQALGIPGVEQHLDLVAVGIVADVAVLQRECRYLV
QRGLPVLASTQPSTQRPGLQALLARVDNGQSQGVPTAQDIAFRIAPKLNVIGRLEDASLA
VELLTTSDPERAQALVQRFVALDEERRQLTQQVIQEASQQVESLDLTREGAIVLAEAGWN
PGVLGIAAAHLVEQYNCPTVLIAKDEAAGRGYGSGRSLPGVNLVEAIEAVRPLLRRGGGH
PMAARIQVDLACLAAVQLALQRELAARVSPDQQARALAVEIILDWELLVSQDRDGVAELD
EVYRQLQLLQPFGHGNPNPVVALMNFRPNSSNLGVSRNGRHLKFELQGSPGSRTLWFWQA
GEELERWQKCQALDIALQLEADDRGKQPWQGKVLAVRPSGEWQAPTLSAPPIEIQDFRQK
PLPDSLKGAICYDGQEAENLVPPPKGAKLVLARWPWLPADLAQLLQQVQPRTLILAASAS
PWDQIPARVNWLMQQWQAGRRDPDELAAATGFPRQWLAELDSPEQIPTLLMGRLQESQAF
HRWLDEASLTQIAQLCQRLMQSDPLSRETREKREKNGE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggaataccgctgggagctgctgcccactcccccccagttcaatccgcaactgagccgg
gaatatggcaagtatgcggccaaggtgatggctctgcggggtctgcacacctgggagcag
gcgcaggccttcgtggatcccgaacactattcccccacaccaccagcatccctgccggat
ctggagcgggcggtggcgcggctgctgcaggcacgggaaagggaagagaccctgtgcatt
tggggggactttgactgcgatggtgtcaccagtaccagtctcctcctctcggcgttacaa
cccttgggcttccgagtccagttctccataccgctgcgcagcaccgaggggcacgggctc
aatcctcaacggctacagcaggtgctggcccagggctgccaagtgatcctgacggtggat
tgcggggtgggcaatgctgccgaaattgccatggcccaagcccagggggtggacgtgatc
gtgacggatcaccacatgctgccggatcccttgcccgctgcctatgcggtggtcaacccc
ttgcgattgccggctgaacatccgctgcgcttcttgccgggggtgggagtggcctacaag
ttggcggaggcgctctaccaagccctagggatccctggtgtcgagcagcacctggatctg
gtggcggtgggaattgtggccgatgtggcggtgttgcagcgggagtgccgctacttggtg
cagcggggcctgccggtgctggccagtacgcagcccagtacgcagcgtccggggctgcag
gctctcctggctcgggttgacaacggccaatcccagggggtgccgacagcccaggatatt
gcttttcgcatcgcccccaagttgaacgtcattggccgcttggaagacgccagcttagca
gtggagctgctgaccacctccgatccagagcgggcccaggcgctggtgcaacggtttgtt
gcccttgacgaagagcgccggcagctcacccagcaagtgatccaagaggccagccaacag
gtagagagcttggatctgacccgggaaggagccattgttctggcggaagccggctggaac
ccaggggttctagggatcgcggcggcgcacttggtggagcagtataactgcccaacggtg
ttgatcgccaaagacgaagcggcgggacggggctatgggtcgggccgttccctgccaggg
gtgaacctggtggaggccatcgaggccgtgcgccccctcttgcggcggggaggcggacac
cccatggccgccaggatccaagtggatctggcttgcctggccgctgtgcaactggcgttg
cagcgggagctggccgcgcgggttagcccggatcagcaggctcgcgccttggcggtggag
attatcctcgactgggagctactggtctctcaggatcgggatggggtggcagagctggat
gaggtgtatcggcaattgcagcttctgcagccctttgggcacggcaaccccaaccccgtc
gttgccttgatgaacttccgtcccaatagctccaacctgggagtctcccgcaatggccgc
cacctcaagtttgaactccaaggctcgccgggatcccgtaccctgtggttttggcaggcc
ggagaagagctggagcgttggcaaaaatgccaagctttggacatcgccctccagttggaa
gcggatgaccggggcaaacagccttggcagggcaaggtgctggcagtgcgcccttcggga
gagtggcaggcacccaccctttctgctccccccatagagatccaagattttcggcagaaa
cccctgccggattcgctgaaaggggccatctgttacgacgggcaggaggccgagaacctt
gttccaccaccaaaaggggcaaagctggtgctggcccgctggccctggctaccggcggac
ttggcccaactgctgcaacaggtacagccccgaaccctgatcctggccgcttctgcctcc
ccctgggatcagatccccgcccgagtcaactggctgatgcaacagtggcaggcaggccga
cgggatcccgacgagctggctgcggcaaccggctttccccggcagtggctggcggaactg
gacagtccggagcagatccccacgctgctgatgggccgccttcaggaatcccaagccttt
caccgctggctggacgaggctagcctcacccagattgcccaactgtgtcagcggctaatg
caatcggatcccctctcaagagagacaagagagaaaagagaaaagaacggagagtag
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