Synechococcus sp. JA-2-3B'a(2-13): CYB_1445
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Entry
CYB_1445 CDS
T00319
Symbol
pnpA
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Pathway
cyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYB_1445 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyb03019
]
CYB_1445 (pnpA)
03016 Transfer RNA biogenesis [BR:
cyb03016
]
CYB_1445 (pnpA)
Enzymes [BR:
cyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CYB_1445 (pnpA)
Messenger RNA biogenesis [BR:
cyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CYB_1445 (pnpA)
Transfer RNA biogenesis [BR:
cyb03016
]
Prokaryotic type
tRNA degradation factors
CYB_1445 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
MnmE_helical
Motif
Other DBs
NCBI-ProteinID:
ABD02412
UniProt:
Q2JLJ5
LinkDB
All DBs
Position
1514303..1516441
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AA seq
712 aa
AA seq
DB search
MAEYTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSILVTATRQPGRPGVDFMPLLVD
YEERLYAAGRIPGGYLRREGRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDD
TVPPDVLCILGASLAIHGARIPFNGPVAAVRVGLVKDEFILNPTYAEIEAGDLDLVVAGC
ADGVIMVEAGANQLPEKDVVEAIEFGFEAIQELLKAQQQVLADLNITPVELPPPPKNEEL
IAFVEEQAQEGIRSILRQFLDKTSREQQLEELKAKLEAQIQERPEGDPLRLYLLENPKEL
DNQFKALLKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSI
TTLGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGETRPSRSPGRREIGHGALAERALVP
VLPKEEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLIKEGD
EVRILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEQAIRQAKAGREFI
LDKMLETIAAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKTVRGITEATGAKVDISDDG
TITVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHISQ
LAEYRVGRVEDEVAVEDEVVVKVRSIDHKGRINLTRLGISPEEAARVRNHHH
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcagaatacactcggtcgatttccttttatgggcgggaaattgacatcaatattggg
ctgatggccccccaggcagggtgtggggtttggctgacttcgggcgaaacctcgattttg
gttaccgccacacggcagccaggccggcctggcgttgattttatgcccttgttggtcgat
tacgaagagcgcctctacgcagcggggcggatcccagggggatatctgcggcgagaaggc
cggccaccggaacgggccactttgatctctcgcttaatagaccgacccattcgtccgttg
ttcccggaatggctgcgggatgatgtgcaggtggtggccaccaccctctcggtggacgat
acggtgccgcccgatgtgttgtgtattttgggagcctcgttagccattcacggcgctcgc
atccccttcaatggccccgtggcggcggtgcgggtgggcttggtcaaggatgaatttatc
ctcaaccccacctatgccgaaattgaggcgggcgatctggatctggtggtggccggctgt
gccgatggcgtgatcatggtggaagccggggccaaccaactgccggaaaaggatgtggtg
gaggccatcgagtttggttttgaggccatccaggagctgctcaaagcccaacagcaagtc
ctggcggatctcaacatcaccccggtagagctgccccctccccccaaaaacgaggagctg
attgcctttgtagaagagcaggctcaggagggcattcgctccattctcaggcagtttttg
gacaagaccagccgggaacagcaactggaggagctcaaggccaagctggaggcccaaatc
caggaacggccagagggggatcccttgcggctctatcttctggaaaaccccaaagagttg
gacaaccagttcaaggctctgctcaagaagctgatgcgccagcaaatcctgcaagagggg
gtgcgggtagatggacgcaagctggacgaggtgcgaccggtctcttgccgggtgggtttg
atcccaagggttcacggcagtgccttgttcaatcgcggcctcacccaagtcctttccatc
actaccctcggcacgcccggcgatgcccaggagctggacgacttgcacccggtggatgag
aagcgctacatgcaccactacaattttccgggcttttcggtgggagaaacgcggccttca
cgctcgccgggacggcgggagattggtcatggggcgctggcggagcgggccttggtgccg
gtgctgcccaaggaagaggagtttccctacgtggtgagggtggtgtcggaagtgctctcc
tccaacggctccacctcgatgggatccgtctgtggctctaccctttctctgatggatgcc
ggggtgccgatcaaagcgccggtcagcggggtggccatgggccttattaaggagggggat
gaggtgcgcatcctcaccgacatccaggggatcgaggactttctgggcgacatggacttc
aaggtggccggtacgcgggcggggatcaccgctctgcaaatggacatgaaaatcaccggc
atcaccgttgacgtggtggaacaggccatccggcaagccaaggccggacgcgagttcatc
ctcgacaagatgctggagacgattgctgcgcctcgaccccagttggccaaaacggctccc
cgtctgctcacgttcaaggtggatcccgaggatatcggcaagatcatcggccccggtggc
aagaccgtgcgcggcatcaccgaagcgacaggggccaaggtggacatcagcgacgacggc
acaatcaccgtgtcttcctcggtgggcggccaggcggaggcggcgcgggcgatgatcgaa
aatctggtgcggcgggtggaagaggggcaggtgtatttgggcaaggtgacccgcatcatc
cccatcggcgcttttgtggagtttttgcccggcaaagagggcatgatccacatttcgcaa
ctggcggagtaccgcgtcggcagggtggaagacgaggtggctgtggaagatgaggtggtg
gtcaaggtgcgcagcatcgatcacaaaggccgtatcaacctcactcgcctcggcattagc
cctgaggaagcagcgcgggtgcgcaaccatcaccactga
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