Synechococcus sp. JA-2-3B'a(2-13): CYB_2100
Help
Entry
CYB_2100 CDS
T00319
Name
(GenBank) helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Pathway
cyb03420
Nucleotide excision repair
cyb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYB_2100
03430 Mismatch repair
CYB_2100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyb03400
]
CYB_2100
Enzymes [BR:
cyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYB_2100
DNA repair and recombination proteins [BR:
cyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYB_2100
MMR (mismatch excision repair)
Other MMR factors
CYB_2100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
ABD03046
UniProt:
Q2JHC6
LinkDB
All DBs
Position
complement(2194342..2196501)
Genome browser
AA seq
719 aa
AA seq
DB search
MLGLASSPFPEVTLRPAQQQALAYQSGPLGIAAVPGSGKTFILELLIADLILNRGIPPER
IGVFTYMRSARGNLISRINQRLQRAGYPDRFTQAFTLHSLSLRVLREAPSRWEELSILEG
YEQERLLSRLCRAWLVRHTQLWEPLIPGDNNPQKIAQNRAQFRRSFQQMVQVVISRAKNL
RLGPEVIPSEGYLGWAAPIYAGYQAELRRLGKLDYDDLGWQAVDLIEGSPELREQVQNWY
DYLFEDEAQDSSPLQEELLRLLSQRTGNLVRVGDPNQSIMGTFTSAEPRLFRAFCQASPQ
VVLLDESSRSAPQIIALANRLVEWVNQQHPIPALRTALAPQPIQLATSGGQNPPASEGGV
DFLRVVGSPEEELQQVARQAIAAAQAFPGQTVAILVTTNELGGKALSYLQEMGAERVIDL
LRGSPSQRRVLLQLKGIIDWFAQPTAPTRLAAAVDCLADWAGIPRAELGPMLTWIRASLP
ERLLFPNFGEAPALPDGPPWQNLGRLLRTLAGWLRAGRSPWPEVLNVIVQSLYRKPEELF
VGRYVIDQLEQVLGSLPETDWQEIAQEFQVILDHRLNNLPSEIFAFDPEPGSITVTTLHR
AKGLEWDQVFIPQVSAYEFPTQYGERTLGLKFLDEVDMQAEALAQLRQLSPKGGWELQAD
SATKQAFLDLAAERLRLLYVGITRSKRRLTLSVSSQSRFGTEQSSSLVFRVLSRSFRAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtctggcttcttctccctttcctgaggtcaccctgcgtccggcgcagcaacag
gcgttggcctaccaatcggggccgctggggatcgccgccgttccggggagcggcaagacc
tttattctggagctgttgatcgccgatttaattctcaatcgagggatcccaccggagcgc
atcggggtgttcacctacatgcgttcggcgcggggcaacttgatcagccgcatcaatcaa
cgtttgcaacgggcggggtatccggatcgctttacccaggcctttaccctgcattctttg
tcgttgcgggtgttgcgggaggcccccagccgttgggaggagctgtctattttggaggga
tacgaacaggagcggttgctcagccgcctgtgccgcgcttggctcgtccgccatactcag
ctctgggagccgctgatccccggcgacaacaacccgcaaaagatcgcccaaaaccgagcc
cagttccggcgcagtttccagcagatggtgcaggtggtcatcagcagggccaagaatctg
cgcctggggccagaagtgatccccagcgagggctatctgggctgggctgctcccatctac
gccggttatcaagcggaattgcgtcgcctgggcaagttagactacgacgacctgggctgg
caagcagtggatttgatcgagggcagtccagagctgcgggagcaggtgcagaactggtac
gactacctgttcgaggatgaggcccaagacagttcccccctgcaggaagagctgctgcgg
ctgctcagccaacgcaccggcaacctggtgcgggtgggggatcccaaccagagcatcatg
ggcacctttaccagcgccgagccgcggctgtttcgcgccttttgccaggccagtcctcag
gtggtgcttttggatgaatccagccgcagtgccccccagatcatcgctttggccaaccgc
ctggtggagtgggtgaatcagcagcaccccatcccggctttgcgcaccgctctggccccc
cagcccattcaactggccacctccggtggccaaaaccccccggccagcgagggtggtgtg
gactttctgcgggtcgtcggatccccggaagaggagctgcaacaggtggcgcggcaggcc
attgcagccgcccaagcttttcccggccaaacggtggccattctggtcaccaccaacgag
ctggggggcaaagccctcagctatctccaggaaatgggagcggagcgggtgatcgatctg
ttgcggggcagtcccagtcagcggcgggtgttgttgcagctcaagggaatcatcgactgg
tttgcccagcccactgcccccactcgcttggctgctgctgtggattgcttggcggattgg
gcggggatcccacgtgctgaactggggccgatgttgacctggatccgcgcctctctgccg
gagcggctgctatttcccaactttggtgaggctcccgctctgcccgatggcccgccttgg
cagaacttgggcaggctgctgcgcacccttgccggttggctccgggccgggcgctcccct
tggccggaggtgctgaatgtgatcgttcaaagcctctaccgcaagccggaagagctgttt
gtgggtcgctatgtaatcgatcagctggagcaggtgctgggatccctgcccgaaaccgat
tggcaggagatcgcccaagaatttcaagtgattctggatcaccgcctcaacaacttgcct
tcggagatcttcgccttcgaccccgagccgggcagcatcactgtcacgactctgcatcgg
gccaaggggctggaatgggatcaggtgttcatcccccaggtgtcggcctacgagtttccc
acccagtacggggagcgaaccctggggctgaagtttttggatgaagtggatatgcaggca
gaggccctggctcagttgcgacagctcagccccaaaggcggctgggagctgcaggccgac
tcggccaccaagcaagcctttttggatttggcagcagagcgattgcggctgctgtatgtg
ggcatcacccgcagcaaacgacggctcaccctctcggtatccagccaatctcgctttggc
acagagcagagttcatctttggtgtttcgggtgttaagtcgcagttttagggccggttga
DBGET
integrated database retrieval system
