Synechococcus sp. JA-2-3B'a(2-13): CYB_2552
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Entry
CYB_2552 CDS
T00319
Name
(GenBank) exoribonuclease, VacB/RNB family
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cyb
Synechococcus sp. JA-2-3B'a(2-13)
Brite
KEGG Orthology (KO) [BR:
cyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cyb03016
]
CYB_2552
Enzymes [BR:
cyb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CYB_2552
Transfer RNA biogenesis [BR:
cyb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CYB_2552
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
NNH6
AAA_28
Motif
Other DBs
NCBI-ProteinID:
ABD03484
UniProt:
Q2JIR4
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All DBs
Position
complement(2656486..2658546)
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AA seq
686 aa
AA seq
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MEKGTLVEFRYNNDRVLAVVQGTEGKKNLLLGVPSGQVHSVHPRQITFALNGGSSFTASD
IPGFWQAVQAKLDPESLALAWELVQEERRSLSLAEMAQLLFSDDSPVSTYAAYRLLSEDR
TYFKQKGESYEPRTPAQVKEILHQMAVAQQRQQEQAEFEAHLREALAHPGQGYPWTPAER
ARLELLERLALQGAAAAIRSHEDLSSNLNPSDRERASQLLELMGFPDTPQGAFEALVALG
LWSRHENLALRLTGIPTQFPKAVERYTQALLSQPPSFWDPHLRQDLTHLHTYTIDDASTR
DIDDALSVEFWSDDAVKLWIHIADPSCWVQWGDPLDLEARKRGTSVYLPERVIPMFPPEL
STGPMSLVQGEVRPALSFGILLGSDGQIRDSEICLSQIKVTYRLTYEDADEMLELGAEAQ
LTAIARAAQWRYGWRMAQGAIQIGLPEQDIKVIDEIPHLRVIEDTPARQMVAEMMVLTGE
VAARFASQNGIPVPYRLQPAPDLPPPEVLDRYPQGPVRSFAIMRCLSRAEVATQPGRHTG
LGLDAYCQVTSPIRRYLDLVAHYQIKAFLRGDPLPLTEADVQQLLLGIEPGTAEANQVER
KSKRYWSIEYLRLRPGQTWRALVLGYLREQENLVLAMLDEIAFRVPVRLERQIPLGAWIE
LEVVQADPRADVIELREVGREAAMCG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagggcacactggtggagtttcgttacaataacgaccgtgtgttggcagtggtt
cagggcaccgagggcaagaagaacctactgctgggggtgccttctgggcaggttcacagt
gttcaccctcgccagattacctttgctttgaacgggggatccagcttcacggcttccgac
attcccggcttttggcaggcggtgcaagcaaagttggatcccgaaagcttggcgctggcc
tgggaactggtgcaggaggagcggcggtctctgagcttggccgaaatggctcagctgttg
ttttctgatgattccccggtctccacctatgccgcctaccgcctcttgagcgaggatcgc
acctacttcaagcaaaagggggaaagctacgaaccccgcactccggctcaggtgaaggag
atcctccatcaaatggccgtcgcccaacaacggcagcaggaacaagcagagtttgaggcc
cacctgcgggaggctctggctcatcccggtcaagggtatccctggactcctgccgaacgg
gcccgtttggagttgctggagcgcctggccctgcagggagcagcagcagccattcgcagc
cacgaggatctctcttccaatctcaacccgtcggatcgggaacgggcctcgcaactactg
gagctgatggggtttcctgacactccgcagggggcttttgaagctttggtggccctgggc
ctgtggagccgccacgagaacctggccctgcgcctcaccgggatcccaacccagttcccg
aaggcggtggagcgatacacccaagccctgctcagccagcctccctctttctgggatccc
cacctgcggcaggatctcacccacctccacacctacaccatcgatgatgccagcacccgc
gacattgacgatgccctcagcgtcgagttctggtcggatgacgcggtgaagctctggatc
cacatcgctgatcccagttgttgggtgcagtggggggatcccctcgatttggaagcccgc
aagcgtggcaccagcgtctatttgccggagcgggtgatcccgatgttcccaccggagttg
tccaccggcccgatgagcttggtgcagggagaggtgcggcctgcccttagctttggcatt
ctactgggatccgacggccagatccgggattccgaaatttgcctcagccagatcaaagtc
acctaccgcctcacctacgaagatgccgatgaaatgttggagttgggggcagaggctcaa
ctgacagccattgcccgggcagcccagtggcgttatgggtggcgcatggctcagggggcc
attcagatcggcctgccggagcaagatatcaaggtcatcgacgagatcccccacctccgg
gtaatcgaggatactcctgcgcggcagatggtggcggaaatgatggtgctcaccggcgag
gtggcggctcgcttcgccagccaaaatgggatcccggtgccctatcgtctgcagccggct
cccgacttacccccacccgaagtgctggataggtatccccaggggccagttcggtctttt
gccatcatgcgctgtctatcgcgggcggaagtggccacccaacctgggcgacatacgggg
ctgggtctcgatgcctactgtcaggttacctccccgattcggcgctacctggatttggtg
gcccattaccagatcaaggctttcctgcgtggggatcccttgccgttgacggaggcggat
gtgcagcagctgctgctggggattgagccgggcaccgctgaggccaaccaggtggagcgg
aaatccaagcgctattggagcatcgaatacctgcgcctgcgaccggggcaaacttggcgg
gccttggtcttgggctacctgcgcgagcaggaaaacttggtgctggccatgctggatgag
atcgcctttcgggtgccggtgcgcctagaacgccagattcctctgggggcttggatcgag
ttggaagttgtgcaggcggatccccgtgcggacgtaattgagctgcgcgaggtgggacga
gaggcggccatgtgcggatag
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