Gloeothece citriformis: PCC7424_1427
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Entry
PCC7424_1427 CDS
T00808
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cyc
Gloeothece citriformis
Pathway
cyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC7424_1427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyc03019
]
PCC7424_1427
03400 DNA repair and recombination proteins [BR:
cyc03400
]
PCC7424_1427
Enzymes [BR:
cyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC7424_1427
Messenger RNA biogenesis [BR:
cyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC7424_1427
DNA repair and recombination proteins [BR:
cyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCC7424_1427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_5
HTH_7
TetR_N
GerE
DUF6115
Terminase_5
HTH_20
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ACK69871
UniProt:
B7K8B1
LinkDB
All DBs
Position
1571204..1573333
Genome browser
AA seq
709 aa
AA seq
DB search
MMYQLNTLETALKQYFGYDNFRPGQREIIEEALENRDLLVIMPTGGGKSLCFQLPALLKP
GVTVVVSPLISLMQDQVDALLDNGIGATFLNSSLDFSEIRSRETAILRNKIKLLYVAPER
LLSEKFTPFLDTIAQQVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRKRYPNVPMFALT
ATATKRVQQDIILQLDLKNPGIHIASFNRTNLYYDIKPKEKRSYNQLLKYIRAHQGSGIV
YCMSRRNVDEIAFRLQNDGISALPYHAGLTDEARTLNQTRFIRDDVRVMVATVAFGMGIN
KPDVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCLLLYSLGDLKKIEYIIEQKTNPQEQ
KIARQQLRQVIDYAEGTECRRTIVLRYFGERFKGNCNNCDNCRHPKPVEDWTIEAQKFLS
CVARCRERFGMGYIIDVLRGANRRRIEENGHHLLSTYGIGKDRTVPEWKNLGRSLIHQGL
VDETTDGLPVLKLNKLSWEILRKQRSVEIAVARKSAETVIGKYNPRKAETEMLLDRLRQL
RKYLADANSVAPYVVFSDSSLKLMAEKKPQTLPDFANISGVTAHKLSQYGERFISEIRDF
CQEQELPVALPNNTQMITLQLYQQGLTIEEIAEQRKLKPSTIYEHFSNLIATNQPVDINQ
FILPVKQELIIQAIKKHGATSLKTLKENLGDNISYGEIRLVLAWMRKQN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgatgtaccagcttaatactctcgaaacagccctaaaacagtattttggttatgataac
tttcgtccaggacagcgagagattatcgaagaagccttagaaaatcgagatttactggtc
attatgccgacagggggcggaaaatccctctgttttcaacttcccgccttactcaaacct
ggagtaaccgttgtcgtctctcctctgatttccctaatgcaagaccaagtcgacgcgcta
ctcgataatggtattggagcaacctttcttaatagtagtttagatttctcagaaattcgc
tcacgagaaaccgccatcctcagaaataaaataaaactgctttatgtcgccccagaaagg
ctcttaagcgaaaaatttaccccctttctcgatactatcgctcaacaagtcggaatttct
gcctttgctatcgatgaagcgcattgtgtttcagaatggggacatgacttccgtcccgaa
tatcgtcaactgagacagctacggaaacgttacccgaatgtgcccatgtttgccctgacc
gccacagccaccaaacgggtacaacaagatattatcctacaattggacttaaaaaatcca
ggaatccatatcgccagttttaaccgtaccaacctttattacgatattaaaccgaaagaa
aaacgaagctataaccaattattaaaatatattcgcgctcaccaagggtctggtattgtt
tattgtatgagtcggcgtaatgtggatgaaatagcctttcgtctgcaaaatgacggcatt
tctgctttaccttaccatgccggtttgaccgatgaagcaagaaccctcaatcaaacccgt
tttattcgggatgatgtgcgggtaatggtagcgactgtcgcctttgggatgggaattaat
aaacctgatgtgcggtttgtcgtccattttgatttaccccgcaacctagaaagttattat
caagagtcgggaagggcaggaagagacggagaaccggctaaatgtctcttattgtatagt
ttaggggatttaaaaaaaattgaatatattatcgagcaaaaaaccaatccccaagaacaa
aaaattgctcggcaacaattacgacaagtcatcgattatgcagaaggaacagaatgtcgt
cgtactattgttttaagatattttggagaaagatttaaaggcaattgtaataattgtgat
aattgtcgtcatcctaaacccgttgaagattggacaattgaagctcaaaaatttctctcc
tgtgtggcacgttgtcgagaaagatttgggatgggctatatcattgatgtgttaagagga
gcaaatagacgacgcattgaagaaaatggtcatcatttattatcaacttatggcatcggt
aaagatagaacagtccctgagtggaaaaatttaggacggtcattaattcatcaaggatta
gtagacgaaactaccgacggtttacccgtcttaaaactgaacaaactcagttgggaaatt
ttacgaaaacaacggtctgtagaaattgctgtcgctcgaaaatcggctgaaactgtcatc
ggaaaatataatcctagaaaagccgaaaccgaaatgctcctagacagattacgacagtta
agaaaatatcttgccgatgctaattctgttgctccttatgtcgttttttccgattctagc
cttaaattaatggccgaaaagaaaccccaaaccttacccgattttgccaatatttccgga
gtgacagcccataaattgagtcagtatggggagcgatttatttccgaaatccgagacttt
tgtcaagaacaagaattaccggtagccttacccaataacacccaaatgattaccctacaa
ctgtatcagcagggattaacgatagaagaaattgccgaacaacgaaaacttaaacccagc
actatctatgaacatttcagtaatttgatcgctaccaatcaacccgtagatattaatcaa
tttatcttaccggttaagcaagagttaatcattcaagcgattaagaaacatggagcaact
tctttaaaaactttgaaagaaaatttaggagataatattagttatggtgaaattagatta
gttctagcttggatgagaaaacaaaattaa
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