Gloeothece citriformis: PCC7424_3738
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Entry
PCC7424_3738 CDS
T00808
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyc
Gloeothece citriformis
Pathway
cyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCC7424_3738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyc03400
]
PCC7424_3738
Enzymes [BR:
cyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC7424_3738
DNA repair and recombination proteins [BR:
cyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PCC7424_3738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Cas3-like_C_2
RecG_dom3_C
AAA_21
Motif
Other DBs
NCBI-ProteinID:
ACK72119
UniProt:
B7KI22
LinkDB
All DBs
Position
4157511..4161017
Genome browser
AA seq
1168 aa
AA seq
DB search
MTFDSVIRAIGRSPLTTELLSKLQRHQTLQLSGIPRLPKGLIASSLAQIQSHNLLIICPT
LEEAGRWATQLEAMGWKTVHFYPTSEGSPYDTLNPESEMIWGQLQVLSGIQTPEAIATSE
PETTKQLYAIVTTEKALQPHLPPPNKLYSYCLNFQQGMTLEAKTLDQNLTQLGYERVNLV
ETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEQLREFDPSTQRSLDHITQLTLTPISF
FPIITDEILRSENLLSSYLSSEELEGLDNRNFPEGMQRFLGLAFPQPASLLNYLPSNTLC
VFDEIERCQAHSDRWIEYIEEQWQDLDPPLPKIHRIFRDSLEIAKEFSNLYLTEITEESS
ASSIPNIDLSSRPLPVTPNQFAKLAEILRGKREIYSGISLNKYAIWLVSAQPSRTVSLLE
EHDCPAQFIPNPKDYLAIDKYQTQTTAVALKYSGLAELEGFILPTFRIVVVTDKEFFGQQ
SLVTGSYIRKRRRAASKQVNLDKLRPGDYVVHRNHGIGKFIKLEILESREYILIQYADGT
LRIPSDSLDSLSRYRHTSNTPPQLDKMTGKTWEQTKQKVRKTVKKLAVDLINLYAKRAQQ
EGFAYPDDSPWQQELEDSFPYQPTPDQIKAIQEVKRDMMNERPMDRLVCGDVGFGKTEVA
VRAIFKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTPSENRDILQ
RLATGELDIVVGTHQLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTAT
PIPRTLYMSLSGVREMSLITTPPPSRRPIKTHLTPYNPDALRTAIRNELDRGGQIFYVVP
RVEGIEEVAAEIRDMIPTARIAIAHGQMSVSELEPTMLAFNNGEADILVCTTIIESGLDI
PRVNTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFT
QLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQEAIREIQGQEIPKVEDT
QIDLKLTAFIPTDYITDANQKMDAYRTIATANSPAELKQIATDLCDRYGALPSPVEQLLQ
VIELKQLAKSLGFSRIKPDGKQHVILETPMEEPAWKLLEENLPKHLRSRFVYSLKKVTVR
GLGVLKPKKQLESLIEWLGKMKGALPEG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgactccgtaattcgtgccatcgggcgatcgcctctgacaaccgaactcctc
agtaaactccaacggcatcaaaccctacagttaagcgggatacctcgtttacccaaagga
ttaatcgcctctagtttggcacaaattcaaagtcataacctcttaattatttgtcctacc
ctagaagaagccgggcgctgggcgacacaactagaagcgatgggatggaaaaccgttcat
ttttatcccacctctgaaggatctccctatgataccttaaaccctgaatctgagatgatt
tggggacaattgcaagtcttatccggtattcaaacccccgaagcgatcgctaccagtgaa
ccggaaacgacaaaacaattatatgctatcgtcaccacagaaaaagccttacagccgcat
ctacccccaccgaataaattgtattcctattgcctcaattttcaacaaggaatgactcta
gaggcaaaaacattagaccaaaatttaacgcaactgggatatgaacgggttaatttagta
gaaaccgaaggacaatggagtcgtagaggggatatcgtcgatattttccccgtttcagcc
gaactccccgtcagattagaatggtttggagatgaattagaacaactgcgagaatttgat
ccctctactcaacgatccttggatcatattactcaactgacattaactcccatcagtttt
ttcccgattattaccgatgaaattttaaggtctgaaaatctcttatcttcttatttatcc
tcagaagaattagaaggattagacaatcgaaattttcccgaaggaatgcagcgattttta
gggcttgccttcccacaacccgcctcattactaaactatttaccgtccaatactctctgt
gtttttgatgaaatagaacgatgtcaggcacatagcgatcgctggatagaatatatcgaa
gaacaatggcaagatctcgatccacccttacctaaaattcatcgaatttttagagactct
ctagaaattgccaaagaattttctaacctttatctaacagaaattaccgaagaaagttcc
gcctcatcaattcctaatatcgatttatccagtcgtccccttccggttaccccgaatcaa
tttgctaaattagcagaaattttacgaggaaagagagaaatatatagcggaattagcctg
aataaatatgccatttggttagtatccgcccaaccgtctagaaccgtttccttattagaa
gaacatgattgtcccgcgcaatttatccctaatccaaaagactatttagccattgataaa
tatcaaactcaaaccaccgcagttgcccttaaatactcaggattagcagaattagaagga
tttattttacccacatttagaatagttgttgttaccgataaagaattttttggacaacaa
agcttagtcaccggttcctatattcgtaaacgtcgccgggcagcctcgaaacaagtcaat
ctcgataaattaagacccggtgattatgtcgtacatcggaatcatggcatcggtaaattt
atcaaattagaaatattagaatcgagagaatatatcctcattcaatatgccgatggaaca
ttacgaattccctcagattctctagacagtttatcccgttatcgccacaccagcaatacc
ccacctcaactggataaaatgacgggaaaaacttgggagcaaaccaaacaaaaagttagg
aaaaccgttaaaaaattagcagtagacttaatcaatctctacgccaaacgcgcccaacaa
gaaggatttgcttatcccgatgatagcccctggcaacaagaattagaagactcatttccc
tatcaacccactcccgatcaaattaaagccattcaagaagttaaacgggatatgatgaac
gagcgcccgatggatcggttagtctgtggtgatgtaggatttgggaaaaccgaagtagcg
gtcagggctatttttaaagccgtcaccagtggcaataaacaggttgcctttcttgcgcca
acaaccattttaacccaacaacattaccacactcttaaagaaagatttgccccttatccg
attaacattggattactcaaccgctttcgtaccccatcagaaaatagagatatattacaa
cgtcttgccacaggagaattagatatagtagtcggaactcatcaactcctaagtaacaaa
gttaaattcaaagacttaggactattagtcatcgatgaagaacaaagatttggagttaac
caaaaagaaaaaattaaaaccctcaaaacccaagttgacgttctaaccttaaccgcaaca
cccattcctcgaaccctatatatgtccctttcaggagtaagagaaatgagtttaattacc
acacctcctccctcccgtcgccccatcaaaacccatttaaccccttataacccagatgcc
ctcagaaccgccatccgtaacgaattagaccggggaggacaaatcttttatgtcgttccc
agagtcgaaggaatcgaagaagtagccgcagaaattcgagacatgattcccaccgcccga
attgcgatcgctcacggacaaatgagcgtatccgaattagaacccaccatgttagccttt
aacaatggggaagcggatatattagtctgtacaaccattattgaatcgggcttagatatt
cccagagttaatactattattgtcgaagacgcgcaaaaattcggattatcccaactctat
caactccggggacgggtaggacgctccggaatacaggctcatgcgtggttagtctatccc
cacaaagccgccttaaccgaaaccgcccggcaacggttacgcgccttacaagaatttacc
caactcggatcagggtatcaactcgctactagagacatggaaattcgaggcgtaggaaac
ctattaggtgctgaacaatccggacaaatggaggccatcggatttgatttatatatggaa
atgttacaagaagcgatccgagaaattcaaggtcaagaaattcccaaagtagaagacacc
caaatcgatttaaaattaaccgcgtttattcctaccgattatattaccgatgcgaatcaa
aaaatggatgcttaccgcactattgcaacggctaattcccccgcagaattaaaacaaatt
gcgacggatttatgcgatcgctacggggctttaccctctcccgttgaacaattattacag
gtcatagaattaaaacaactcgctaaatctttaggtttttctcggattaaacccgatgga
aaacagcacgttattttagaaactccgatggaagaaccggcttggaaattgttagaagaa
aatttaccaaaacatttgcgatcgcggtttgtttatagcctgaagaaagtgacggttaga
gggttaggggtattgaaaccgaagaaacagttggagagtttaattgagtggttggggaag
atgaagggggcattaccagagggttaa
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