Cyanobacterium sp. DS4: Dongsha4_02290
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Entry
Dongsha4_02290 CDS
T11028
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyd Cyanobacterium sp. DS4
Pathway
cyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dongsha4_02290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyd03019
]
Dongsha4_02290
03009 Ribosome biogenesis [BR:
cyd03009
]
Dongsha4_02290
Enzymes [BR:
cyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dongsha4_02290
Messenger RNA biogenesis [BR:
cyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dongsha4_02290
Ribosome biogenesis [BR:
cyd03009
]
Prokaryotic type
rRNA helicases
Dongsha4_02290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WVL01043
LinkDB
All DBs
Position
513713..515188
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AA seq
491 aa
AA seq
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MTISFSSLGLSESLVNQLEKIGFVTPTKIQSLAIPELLSGRDVVGQSQTGTGKTAAYSLP
ILDSIDRSSKDVQALILTPTRELAQQVAESLKDFIARGDRTYVLTVYGGQSIERQIRFLE
KGSHIVVGTPGRIIDLLNRKNLTLDALRYAVLDEADEMLSMGFIDDVKEILSQTPKSRQT
ICFSATMPKEIQYLVKEFMNDPINATGEKPQDTPSRIDQCVYMVPRGWSKIKTIQPILEI
EDPQSGIIFVRTKRTASELTTKLQEAGQSVDEYHGDLSQSQRERLIQRWREGKIKLVVAT
DIAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTGRAGKEGKAIALVEPSDRRFLRQIER
RLNQTIRVENVPNRSTVEAKRMEKLTEQIKESLAGERLASFLPLVKELHEDYDPTAIAAA
TLQILYDQDCPSWLQQDWEVPPPATPKPYIKKGKGGRTKYGSRGSDSFDRQSKYKGKPKR
SYNRSVKLNNR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgacaatttcattttccagtttaggactatccgaatccttagttaatcaactagaaaaa
atcggttttgtgactcccaccaaaattcaatcattagcaattcccgaattattatcaggg
cgtgacgtagtagggcaatcgcaaactggtacaggtaaaacagccgcttattctctacct
atcttagatagcattgatcgcagttccaaagatgttcaagccttaattttgactcctacc
agagaattggctcaacaagtagccgaatccttaaaagactttattgcaaggggcgatcgc
acctatgtattaacggtttatggtggtcaatccatagagcgtcaaattcgctttttagaa
aaaggatcgcatatagttgttggaacaccagggcgaattatagatctgcttaatcgtaaa
aatcttactttagatgcccttcgctatgcggttttagacgaagcagacgaaatgttaagt
atgggctttattgacgatgtaaaagagattctttctcaaactcctaaatctcgtcaaacc
atttgtttctcggcaactatgcccaaagagattcaatatttggtaaaagagttcatgaat
gatcctatcaatgctacaggagaaaaacctcaagatacaccctcccgcattgatcagtgt
gtttatatggtgcctcgtggttggtctaaaattaaaactattcaaccaatccttgaaatt
gaagatccccaaagtggtattattttcgtaagaaccaagcgtactgcttctgagctaacg
actaaattacaagaagccggtcaaagcgtagatgagtatcatggtgatttaagccaatct
caacgggagcgtttaattcaacgttggcgtgaaggaaaaattaagttggtagtggctaca
gacattgccgccagaggtttggatgtgtctgatttaacccacgttttcaatttcgattta
ccagataataccgagacttatattcaccgtataggacgtacaggaagggcaggaaaagag
ggtaaagctattgctttagttgaaccaagcgatcgccgttttttacgtcaaattgagcgt
cgtttaaatcaaaccattcgggtggaaaatgtccccaatcgctctacggtagaagcgaaa
agaatggagaaactcacggaacaaattaaagaatctttagctggtgaaaggttagcttct
ttcttacctttagttaaagaactacatgaagattatgatccaactgcgatcgcagccgct
acgttacagatattgtacgatcaagattgtcctagttggctacagcaagattgggaagtt
ccccctcctgcaactcctaaaccttatatcaaaaagggcaaaggaggacgtactaaatat
ggtagtcgtggctctgatagcttcgatcgtcaaagtaaatacaaaggcaaacctaaacgt
agttataaccgttcagtaaagctaaataaccgataa
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