Cyanobacterium sp. DS4: Dongsha4_02605
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Entry
Dongsha4_02605 CDS
T11028
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cyd Cyanobacterium sp. DS4
Pathway
cyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dongsha4_02605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyd03400
]
Dongsha4_02605 (mfd)
Enzymes [BR:
cyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dongsha4_02605 (mfd)
DNA repair and recombination proteins [BR:
cyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dongsha4_02605 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WVL01100
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Position
587213..590728
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AA seq
1171 aa
AA seq
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MLNSVIRAIASSTLTQDLYQKLNQNKTLHLQGASRLPKGLVASAIANQGNNNLLVVCSTL
EEAARWMANIELMGWKQTFFYPTSEASPYEAFDPESEMVWGQLQTLSSLLSQDTTQKTAI
ITTEKALQPHLPPVEVLKEYCLSLFKGMSLESQEIELTLAKMGYERVNLVEIEGQWSKRG
DLIDIFPVSAELPVRLEFFGDELEKIREFDPVSQRSLDAIESLSLTPTTWQGLISQNLPS
VEIIKPYLSTSEQENLENNIYPEGMTRFLGFAFGDRVCSLLDYLPPNTVVAIDEVEQCQA
HSHIWFEQAEDKWELMQKLVEIPPNPPLKGGNNGMLHREFTECLASINYPQIFLSEIYTD
TDKDNKNSLNLSSRPLPISPHQFAKLAEILRGKKEIYNTINLSQYNSWLVSAQPSRTVAL
LQEHDSPAQFIPNPLDFGTIEKLQRQGISTALKYSGQAELEGFILPTFRIVVVTDREFFG
QHNLATPTYIRKRRKAASKQVDLDKLRPKDFIVHKYHGIGQFLELEIYDGREYLVIKYAD
GLLRVPADSLELVSRYRHTETKPPKLNKMSGKEWQNVKNKVKKSIKKLAVDLVKLYATRN
ELKGYAYPPDSPWQIELEDSFPYQATPDQLKAIIDVKRDLESDRPMDRLVCGDVGFGKTE
VAIRSIFKVVTSGNKQVVFLAPTTILSQQHYHTLMERFAPYPINIGLLNRFRTASERKEI
IQKLATGELDIVVGTQLLLSNKIKYKDLGLLVVDEEQRFGVNQKEKIKALKTSIDVLTLS
ATPIPRTLYMSISGVREMSLITTPPPSRRPIKTHIMPFNQEVIRTAIRNELDRGGQIFYV
VPRIEGMEKIITMLEQMIPSLRIAIAHGQLDEGQLESTMLGFSNGEADLLLCTTIVESGL
DIPRVNTIIVESAHKFGLSQLYQLRGRVGRSGIQAHAWLLYPNDEILSDIAKKRLRALQE
FSQLGSGYHLAMRDMEIRGVGNLLGAEQSGQMEAIGFEMYTEMLKEAINEIQGQEIPQVE
DTQIDLKLTALIPNRYIADMEQKMDAYRAVATVTSQREIKQIESDWQDRYGEIPESAREL
LLVADLKLKAKSIGFSRIKPEGKQNIILETPMQEPAWLLLAEKLPPHLRNRFVYGKNKVI
VRGLGTMKPSQQLENLNNWFTYLVSENSSLV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattctgtaattcgtgcgatcgcatcttctaccttaactcaagacctttaccag
aaattaaaccaaaataaaacgttacatttgcaaggtgcatccagattaccgaaaggatta
gttgcctcagccattgcgaaccaaggaaataataacttacttgtagtctgctcaaccctt
gaagaagccgcccgttggatggcaaatattgagcttatgggctggaaacaaacttttttc
tatcctacctcggaagcaagtccttatgaggcttttgacccagaatccgagatggtgtgg
ggacagctacagaccctttctagtctgcttagtcaagatactacacaaaaaacagctatc
ataaccacagaaaaagccttacaaccccatttacctcccgttgaagtattaaaggaatat
tgtctaagtctgtttaagggcatgagtttggagagtcaggagattgaattaactttagca
aaaatgggttatgagcgggttaatttagtagaaattgaggggcaatggagtaaacggggg
gatttaatcgatattttccccgtatccgccgaattacccgttagattagagttttttggg
gatgaattagagaaaattagggaatttgatcccgtttctcaaagaagtttagatgcgatc
gaatctttgagtttgactcctaccacatggcaagggctaattagtcagaatttacccagt
gtagaaattattaaaccatatttaagcacttctgagcaagagaatttagaaaataatatt
tatcctgaagggatgactcgttttctcggctttgccttcggcgatcgagtctgttcttta
ttggactatttgccccccaatacagtagttgcgatcgatgaagtggaacagtgtcaagcc
catagccatatttggtttgaacaagcagaagataaatgggagttaatgcaaaagttggtg
gagatcccccctaacccccctttgaaaggggggaataatgggatgttgcatagagaattt
acggaatgtttagcaagtattaattaccctcaaatttttctttcagaaatttatacagat
accgataaagataataaaaatagtttaaatttatccagtcgccctttacctatttctcct
catcaatttgctaaattagcagaaattttaaggggtaaaaaagaaatttataacaccatt
aatttaagtcaatataatagttggcttgtttctgcacaaccttctcgcacagtggcttta
ttgcaagaacatgactctcctgctcaatttataccgaatcccctcgattttggcacgatt
gaaaaactgcaaagacagggcatttctaccgctttaaaatattctggacaagcagaatta
gaagggtttattttacccacttttcgcatagtagttgttaccgatagagagttttttgga
caacataatttagccactcctacttatatcagaaaacgcagaaaagccgcctcaaagcag
gttgatttagacaagttaagaccaaaagattttattgtccataagtatcatggtattgga
caatttttagagttagaaatttatgatggtagggaatatttagttatcaaatatgctgat
ggattactcagagttcctgccgatagtttagagttagttagccgttatcgacacacggaa
actaagccaccaaagttaaataaaatgtccggtaaagagtggcaaaatgtcaaaaataag
gtcaaaaaatctattaagaaattagcggtggatttagtcaaattatatgccactagaaac
gaattaaaaggttatgcttatccccctgattctccttggcaaattgagttagaagattct
tttccttatcaggctacaccagatcaattaaaggcaattattgacgttaaaagagactta
gaaagcgatcgccctatggatagattagtatgtggtgacgtgggtttcgggaaaacagaa
gtagccattaggagtatttttaaagtggtgacatcggggaataaacaagtggtttttctt
gcaccgactactattttatcccaacaacattatcatactttaatggaaagattcgctcct
tatcctatcaatataggcttattaaatcgcttccgcacagcgtcagaaagaaaagaaatt
atccaaaaattagcaacgggagaattagatattgtggtcggtacacagttattattaagc
aataaaattaaatacaaagatttaggcttattagtagtagatgaagagcaaagatttggg
gttaatcaaaaagaaaaaattaaagcattaaaaacatccattgatgtgttaactctcagt
gccactcctatccctcgtactttgtatatgtctatctctggagtgcgggaaatgagcctt
attaccactcctccccccagtcgtcgccccattaaaacccatatcatgccctttaatcaa
gaggtgattcgtactgccattcgcaatgaattagataggggaggacaaattttctatgtt
gtgcctcgcattgagggcatggaaaaaattatcaccatgttagaacaaatgatacctagt
ttaagaattgcgatcgcccacgggcagttagatgaagggcaattagaatcgactatgtta
gggtttagtaatggagaggcggatttgctactctgtacgactattgtggagtctggctta
gatattcccagagtgaatacaattattgtggaatctgcccataaattcggattatctcaa
ttatatcagctacggggacgagtggggcgatcgggcattcaagcccacgcatggttactc
tatcctaatgatgaaattttatcagatattgccaaaaaaagattaagagctttgcaggag
ttttcacaactcggttcagggtatcatttagctatgcgtgatatggaaataagaggggtt
ggtaatttacttggtgctgaacaatctgggcaaatggaggctattggatttgagatgtac
acagagatgttaaaagaagccattaacgaaattcaagggcaagaaatcccccaagtagaa
gatactcaaatcgatttgaaactcactgctttaattcctaaccgctatattgctgacatg
gaacaaaaaatggatgcttaccgtgctgtagctaccgttacatctcagagggaaataaaa
caaatcgaaagtgattggcaggatagatatggagaaatacccgaatcagcaagggaatta
ttattagtagccgatttaaaattgaaagcaaaatccattggtttttctcgcattaaaccc
gaagggaagcaaaacattatccttgaaacaccaatgcaagaaccagcatggttattatta
gcggaaaaacttcctccccatttacgcaaccgctttgtgtatggaaaaaataaggtaatt
gtgaggggattaggtacaatgaaaccgagtcaacaattagaaaacctcaataactggttt
acctatcttgtcagtgaaaacagtagcttagtttaa
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