Cyanobacterium sp. DS4: Dongsha4_09040
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Entry
Dongsha4_09040 CDS
T11028
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cyd Cyanobacterium sp. DS4
Pathway
cyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dongsha4_09040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyd03019
]
Dongsha4_09040
Messenger RNA biogenesis [BR:
cyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dongsha4_09040
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WVL02308
LinkDB
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Position
2085601..2087496
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AA seq
631 aa
AA seq
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MKDKKVYTIKGRRTRKTVTTENTAPTPVEKSNSNHQPHVKIVPLGGLHEIGKNTCIYEYE
DEMILVDAGIGFPTDGMHGINVVLPDMTYLKENNHKIKAMIATHGHEDHIGGIPYHLKQV
DFPLIYGPRLAMSLLSDKLEEAGLLEKTKIHTVSPREVVKIGKHFRVEFIRNTHSIADSF
TLAIHTPIGVLIHTGDYKVDHTPVDGEYFDFHRLAQLGEEGVLCLLSDSTNSEVPGFTPS
EMSVYPGLDRAFTQAKGRLMVTTFATSVHRINIVLALAMKHNRKVGVVGRSMLNVIAHAR
KLGYIKCPDHIFVPLRTLRSLPDDQVLILCTGSQGEKFAAMTRISRGEHPHIKVREGDSI
VFSANPIPGNTIAVVNTIDRLMIQGANVIYGKQAGVHVSGHGCQEDQKLMLALTKPKFFV
PVHGEHRMLVKHSETAQSVGVPKENIVIIDNGDSIDLTVDSIAKGEKVPSGIQLVDTAGV
VHEHVMEERQQLAEDGVITIAAVIDSKGNLLVEPQVNLRGVVCTMEVPSLERLITRTVDR
TISDRIKSNLLLSEGDNINWNSIRIEVETNLSRVIQREINSEPLVIFILQVQEEINNNNG
QINSESLSDSDDNDEGDGKFTRRRRKATANV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaaaaagtatataccattaaaggcagacgcaccagaaaaactgtaaccaca
gaaaacaccgctcccactcctgtggaaaaaagcaattctaatcatcaaccccatgtaaaa
attgttcctttagggggattacatgaaattgggaaaaatacctgtatctatgaatatgaa
gatgagatgattttagtggatgcgggtatcggtttccctactgatggaatgcacggtatt
aacgtggttttacctgacatgacttatttaaaggaaaataaccacaaaattaaggcaatg
attgccactcatggacacgaagatcatattggtggtattccttatcatttaaaacaggtg
gacttccctttgatttatggacctcgtttagccatgtctttactttctgataaattagaa
gaagcaggacttttagaaaaaaccaagattcatactgtttcccctagagaagtagttaaa
attggtaaacattttcgagtggaatttatccgcaatacccactccatcgctgatagtttc
accctagcaatccatactcccattggggttttaatccacacaggagattataaagtagat
catacccctgttgatggagaatattttgattttcaccgtttagcccaattaggagaagag
ggagtattatgtttactgagtgactccactaactccgaagtacccggattcaccccctca
gaaatgtcggtttatcccggtttagatcgagctttcactcaagcgaaagggcgtttgatg
gtgacaacctttgctacttccgttcatcgtatcaatattgtccttgccttagccatgaaa
cataaccgtaaagtgggggtagtggggcgatcgatgcttaatgtgattgcccatgcccgt
aaattaggttacatcaaatgtccagatcatatatttgtacctttaagaactttacgctct
ttacctgatgaccaagtattaatattgtgtacagggtctcaaggggaaaaatttgcggcc
atgactcgtatttcacggggagaacatcctcatattaaagtaagagagggagattcgatc
gtcttttctgctaatcccattccgggcaacaccattgcggtagtaaatacaattgatcgc
ctgatgattcaaggagcaaatgttatctatggtaaacaagcaggggtacacgtttcaggt
catggttgtcaagaagatcaaaaattgatgttagctttaaccaagcctaagttttttgta
cccgtccacggtgagcatagaatgttagtaaaacactcagaaactgctcaaagtgtagga
gtgcctaaagaaaacattgtaattatcgataatggtgatagcatcgatctaacggtagat
agcattgctaaaggagaaaaagtaccttcaggtattcaattagtcgatactgctggggtg
gttcatgaacacgtaatggaggaaagacaacaattagctgaagatggtgttattacgatt
gccgcagtgattgactctaaaggtaatttattagttgagcctcaagttaatttacggggg
gttgtctgcactatggaagtacctagtttagaaaggttaatcaccagaacagttgatcgc
acaataagcgatcgcatcaaaagtaacttacttctaagtgagggggataatatcaactgg
aatagtattcgcattgaagtggaaaccaatctcagccgtgtcattcaaagagaaatcaat
agcgaacctttagttatttttatcttacaagtccaagaagagataaataataacaacgga
caaataaacagtgaatctctttctgatagtgatgataatgacgaaggagacggtaaattt
actcgccgtcgtcgtaaagctactgcgaatgtctag
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