KEGG   Cyanobacterium sp. DS4: Dongsha4_10390
Entry
Dongsha4_10390    CDS       T11028                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
cyd  Cyanobacterium sp. DS4
Pathway
cyd03030  DNA replication
cyd03430  Mismatch repair
cyd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cyd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Dongsha4_10390 (dnaE)
   03430 Mismatch repair
    Dongsha4_10390 (dnaE)
   03440 Homologous recombination
    Dongsha4_10390 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cyd03032]
    Dongsha4_10390 (dnaE)
   03400 DNA repair and recombination proteins [BR:cyd03400]
    Dongsha4_10390 (dnaE)
Enzymes [BR:cyd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Dongsha4_10390 (dnaE)
DNA replication proteins [BR:cyd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Dongsha4_10390 (dnaE)
DNA repair and recombination proteins [BR:cyd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Dongsha4_10390 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP Intein_splicing LAGLIDADG_3 Hint_2 Vint
Other DBs
NCBI-ProteinID: WVK99109
LinkDB
Position
complement(2382176..2385781)
AA seq 1201 aa
MSFVGLHIHTDYSLLDGASQIPALVERATELNMPAIAVTDHGVMYGAIQLIKNCLNKGIK
PIIGNEMYVINDDITIPHKKIRKYHQIVLAKDKKGYQNLVKLTTISHLEGMQGKGIFSRP
CVNKELLEKYHEGLIVTSACLGGEIPQAILQGDDKRAREVAKWYKNVFGDDFYLEIQDHG
SQEDRIVNIEIVKISKELDIKIVATNDSHFISCYDVEAHDALLCIQTNKNIDELKRLRYS
GTEYLKSPEEMRLLFRDHIDSETIEKAIINTLEIADKVKPYNVLGEPRIPDYKVPAGHTP
ESYLEEVTWQGLLNRLKCIKRSEINPEYRQRLEYELKMMEKMGFSTYFLVVWDYIKYARD
NNIPVGPGRGSAAGSLVAYALGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIEKRDQ
MIKYVTDKYGEDNVAQIITFNRLTSKSVLKDVARVIGIPYADSDYMAKLIPVSRGKPAKL
KVMISDETPSPEFKEKYDTDPKVKRWIDMAIRIEGTNKTFGVHAAGVVISSQPLDEIVPL
QKNNEGAVITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELIRYNQNLEIDVDELPLGE
RKALEILAKGTSKKLPADVAKTHQLLESGDLEGVFQLESDGMKQIVRDLKPSGIEDISSI
LALYRPGPLDAGLIPIFINRKHGREKIEFQHPMLKPILTETYGVLCLAKGTLINKPNGEW
ERIENIKAGDVILTSNGENVWKAKVAKQWQSGIKDIIKITLSTGTEICCTKNHRFLTPEG
DKFAGELNAENNLKNAHIYNSVLYEKWLASSNKIKLKQNEAYLLGLSTNHSLPYNSIDFS
ECDRIELLRGIWDSDGCYGGRIIYFRSVSQKLLKQVGDLLSTLKIAYYIKDNAVYIQDKN
RFKQLIQGAKLPNKQYQIVEGYLPIKSEKFRELLSDSIIETDSLTRKTVKRSLANSTLFK
PIKSEYSIKLNNWDNFYQYLYQKTYLQDVRPVYVTKIEEIGKEECFDIEMEDQTSPYFLA
NNIVTHNCYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKHREIFIDGAIKNGVN
QAIAENLFEQMVKFAEYCLSYDTEILTVEYGAMSIGKIVEEKINCQVYSVDKNGFIYTQN
IAQWHDRGSQELFEYELEDGRIIKATKDHKMMTKDGQMLAIDDIFERELELYSVDNMGVM
S
NT seq 3606 nt   +upstreamnt  +downstreamnt
atgtcttttgttggtttacatatccatactgattatagtttactcgatggtgcttctcaa
attcctgctctggtagaacgtgctacagaactcaatatgcctgcgatcgcagttacggat
cacggtgtaatgtatggagcaatacaactaattaaaaattgtttgaataaaggaattaag
ccgattatcggtaacgagatgtatgtgattaacgatgatataaccattccccacaaaaaa
atcagaaaatatcatcaaattgttttagcaaaagataaaaaaggctatcaaaatttagtc
aaattaaccactatttctcacctcgaaggaatgcaaggaaaagggattttttctcgccct
tgtgtgaataaagaattgttagaaaagtatcatgaaggattaatagtaaccagtgcttgt
ttagggggagaaattcctcaagcaattttacagggagatgataaaagagcgagggaagtc
gctaagtggtataagaatgtttttggcgatgatttttatttagaaattcaggatcatgga
tcacaagaagatagaattgtcaatattgaaattgtcaaaatcagcaaagaattagatata
aaaatagttgcaaccaatgattctcactttatttcctgttatgatgtagaagcccatgat
gcccttttatgtattcaaactaataagaatattgatgagttaaaaagacttagatattca
ggcacagaataccttaaatctcccgaagaaatgaggctattatttagggatcatattgat
agtgaaaccattgaaaaagctatcattaataccttagaaatagcagataaagttaagccc
tataatgtattaggtgaacctcgtattcctgattataaagtacctgcagggcatactccc
gaaagctacttagaagaagtgacatggcaaggcttattaaacagacttaaatgtattaaa
cgcagtgagataaatcccgaatatcgtcagcgtttagagtatgaattaaagatgatggaa
aagatgggtttttccacttatttcttagtagtttgggattatataaaatacgctagagat
aataatattcctgtaggacctggcagaggttcggcggcaggttctttggtagcttatgct
ttaggaattaccaatattgatcctgttcatcatggcttattatttgaaagatttttaaat
cctgaacgtaaatctatgcctgatattgatactgatttttgcatagaaaaaagggatcaa
atgataaaatatgtcacagataaatatggagaagataacgttgctcaaattattactttt
aaccgtttaacttccaaatcagtattaaaagatgtggctagagtgattggtattccttat
gctgattccgattatatggcaaaattgattcccgtttcgaggggaaaacctgctaagtta
aaggtgatgatttccgatgaaactccttctccagaatttaaagaaaaatacgatacagat
cccaaagttaagcgttggattgatatggcaattagaattgaaggtacaaataaaaccttt
ggagttcatgcggctggagtggttatttctagtcagccattagatgaaattgtacctcta
caaaaaaataatgaaggtgcggttattactcaatattttatggaagatttagagtcttta
ggcttattaaaaatggactttctaggcttaaaaaatttaaccacaattcaaaaaactgcg
gagttaattcgctataatcaaaacttagaaatagatgtggatgagttgcctttaggggag
agaaaagccttagaaattctggcaaaaggcacaagtaaaaagttacctgcggatgtggct
aaaactcatcaactgcttgaatcaggggatttggaaggggtttttcagcttgagtctgac
gggatgaaacagattgtaagggatttaaaaccgtcgggtattgaggatatttcttctatt
ttagctttatatcgtccaggtccattagatgcagggttaattcctatctttattaatcgc
aaacatggtagagaaaaaattgagtttcagcatccaatgttgaagcctattttaacagaa
acttatggggttttatgtttagctaaaggtacattaattaataagcctaatggtgagtgg
gagagaattgaaaatattaaggcaggggatgttattttaacttctaatggggaaaatgtt
tggaaagcaaaggttgcaaagcaatggcaaagtggtattaaggatattatcaaaattact
ttatccactggtacggaaatttgttgtacaaaaaatcatcgttttctaactcctgaagga
gataagtttgcaggggaattaaatgcagaaaataacttaaaaaatgctcacatttataac
tctgttttatacgaaaaatggttagctagtagtaataaaattaaactgaaacaaaatgaa
gcctatttattaggattatctactaatcactctttaccctataattctattgatttttca
gagtgcgatcgcatcgagttattgagaggaatttgggatagtgatggttgttatgggggt
agaataatttattttcgcagtgtttctcagaagttgttgaaacaagtaggggatttatta
agcacattaaaaattgcttattatataaaagataatgctgtttatatccaagataaaaat
agatttaaacaattgatacaaggggcaaaattacctaataaacagtatcaaattgtagaa
ggatatttaccgattaaaagtgaaaagtttagagaattactatcagattctatcatagaa
acagactcactcacaagaaaaactgtaaaacgctctttagcaaactcaactttattcaaa
cctatcaagtcagagtatagcattaaactaaataattgggataatttctatcaatattta
tatcaaaaaacctatcttcaagatgttcgccctgtttatgtaactaaaatagaagaaata
ggaaaagaggaatgttttgacatagaaatggaggatcaaacttctccttattttcttgct
aataatattgtcacccataattgttatcaagaacaaattatgaaaatggcacaggatttg
gcaggatattcattgggagaagcagacttattgcgtcgtgcgatgggtaagaaaaaggct
tccgaaatgcaaaaacatcgagagatttttattgatggtgcgataaaaaatggagtaaat
caggctattgctgaaaatttgtttgagcaaatggtaaaatttgctgagtattgtttgagt
tatgatacagagattttaacggtagaatatggggcaatgtctataggtaaaatagtggaa
gaaaagattaattgtcaagtttatagtgtggataaaaatggctttatttatactcaaaat
attgctcaatggcacgatcgaggctcacaggaattatttgaatatgaattagaagatggt
agaattattaaggcaacaaaagaccataaaatgatgacaaaagatggtcaaatgttagct
attgatgatatttttgaacgagaattagaactatattctgttgataacatgggggtaatg
agttag

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