Rippkaea orientalis PCC 8802: Cyan8802_1777
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Entry
Cyan8802_1777 CDS
T00968
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyh
Rippkaea orientalis PCC 8802
Pathway
cyh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cyan8802_1777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyh03021
]
Cyan8802_1777
03400 DNA repair and recombination proteins [BR:
cyh03400
]
Cyan8802_1777
Enzymes [BR:
cyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cyan8802_1777
Transcription machinery [BR:
cyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cyan8802_1777
DNA repair and recombination proteins [BR:
cyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cyan8802_1777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ACV00677
LinkDB
All DBs
Position
complement(1807906..1811850)
Genome browser
AA seq
1314 aa
AA seq
DB search
MTFYNYIVDKGRLKKLIAWAYRNYGSARSSQMADNLKDLGFRFATKAGVSISIDDLTIPP
TKRGLLESAQESIRITESRYAKGEITEVERFQKVIDTWNSTSEELKDEVIRNFQETDPLN
SVYMMAFSGARGNMSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYVISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVRETDCGTQRGLMVSAMKDGDRVKIPLVDRLY
GRVLAADVVVDGEVLAKRNQSIDPELAVFLSERVEEVMVRSPLTCEAARSVCQNCYGWSL
AVGRLVDKGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQVKAPGRGKISWGKGL
NTRKVRTRHGDDAEQVEIAGDLVWTPTDGGKAVPFSVTPGSFLFVTQGQTVETDQLLAEV
TNTRVQKSTERATKDVTTDLAGEVLFSQLVPEEKTDRQGNTTRIAQRGGLLWVLSGQVYN
LPPGAEPVVSNGDSVEPGTVLAETKLISVHGGVVRRPEGSREIEIITASVLLDHAEVKME
SSGGREQYIIHTQDGQRFLLLAAPDTKVQNHAIIAELIDDRYQTNTGGILRYGGIEVSKG
SRKMGYEVTQGGSLLWIPEETHEVNKDISLLVVEDGQYVEAGTEVVKDIFTSISGVVEVI
AKNDILREIIIKPGEFYLDDSGLGSSGHTIANGDLVPPGTEVLPGIVTEELHYAEWVEST
EGVGLLLRPVEEFPVSDSPATPKQGSINASGGRQIELRSVQRIFYKDGERVKSVDGTQLL
STQLVLEIEVDSSEHTPHLTADIELKEDPKIEGTRLQLVILESLVLRRDLDTDPHGGLIK
TNVLVKNGEQIPPGAVVAATEIQCSVGGEVRGIKQGIEAIRRILIVRDEDKARLVLDTPP
SVGVNSLIVESGELAPGMPSDVSGRVIAVNPLGDSGQFELILRKARPYRVSAGAILHIDD
GDLVQRGDNLVLLVFERSKTGDIIQGLPRIEELLEARKPKEACILARKPGVTQVEYLEDE
SVDVKIIEEDGTISEYPILPNQNVLVSDGTRVDVGEPITDGPANPHEILEVFFNYYVDRL
GVYEAALKGLRAAQQFLVDQVQTVYQSQGIDISDKHIEVIVRQMTSKVRVDDGGDTTMLP
GELVELRQIEQVNEAMAITGGAPARYTPILLGITKASLNTDSFISAASFQETTRVLTEAA
IEGKSDWLRGLKENVIIGRLIPAGTGFHLSEDLSTIEPEFESERPSRSPSYSREFERSSG
ESNHPNRLLGSNLDEVDENMVLDDNIARAYAEGDAPWSYDVDDDDDDEFDDDDD
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgacattctacaattacattgttgacaaaggtcgtttgaaaaagttaattgcttgggca
taccgcaattatgggtcagcaagaagctctcaaatggctgataatttgaaagatttgggc
tttcggtttgcgacaaaagcaggggtttctattagtattgatgacttaacgattccccca
acaaaacgaggcttattagagagtgcccaagaatcaattcgcattactgaatcacgctac
gctaagggagaaattaccgaagtagaacggttccaaaaagtaatcgatacctggaatagt
acctccgaagaactcaaagatgaagtcattcgcaattttcaggaaaccgatcccctcaat
tccgtctatatgatggctttctccggtgcacggggaaatatgagccaagttcgtcaatta
gtgggaatgcggggcttaatggctgatccccaaggggaaatcatcgacttacccatcaaa
actaacttccgagaagggttaaccgttaccgaatacgtcatctcctcctatggagcccgt
aaaggtctggtagacaccgccttacggacggctgactctggttatctcacccgacgctta
gtcgatgtatcccaagacgtgatcgtccgagaaactgactgcggaacccaacgaggactc
atggtcagtgcgatgaaagacggcgatcgcgtgaaaattcccctcgttgatcgcttgtat
ggacgggttttagccgccgatgtcgtcgttgatggggaagtcttagctaaacgcaaccaa
agtatcgatcctgaactggctgtcttcctcagtgaacgggttgaagaagtgatggtgcga
tcgcctctcacctgcgaagccgcgcgatcagtctgtcaaaattgttacggttggagttta
gctgtcggtcggctggtggacaaaggagaagccgttgggattattgccgcccaatccatc
ggcgaacccggaacccagttaaccatgcggaccttccacactggaggggtcttcaccgga
gaagtggcccgtcaagtcaaagcccccggacggggtaagatttcctggggtaagggatta
aatacccgtaaagtccggactcgtcatggggacgatgccgaacaggtagaaattgccgga
gatctggtttggactcccaccgatggaggtaaagcggttcccttttccgttacacctggg
tctttcctcttcgttacccaaggccagaccgtggaaaccgatcaactcctagccgaagtc
accaatacccgtgttcaaaaatctacagaacgcgcaaccaaggacgtaaccaccgacctc
gccggagaagtcctctttagtcagttagtacccgaagaaaagaccgatcgccagggcaat
actacccgcatcgcccaacgggggggactcctttgggtactctcaggacaggtctataat
ttgccaccaggggctgaaccagtggtatctaacggagattctgtcgaaccagggacagtt
ttagctgaaaccaagttaattagcgtccatggcggggtagtacgccgtccagagggtagc
cgcgagattgagattatcactgcttcagtgttgttggatcatgctgaagtgaaaatggaa
agtagcggaggacgggaacagtacattattcacacccaggacggacagcgatttttatta
ctggccgcccccgataccaaagtccaaaatcatgccattatcgccgagttgattgacgat
cgctatcaaaccaacaccggaggcattctgcgctacggaggcatcgaagtctctaagggt
agccgtaaaatgggctacgaggtgacgcaagggggatcattgttatggattcctgaagaa
acccacgaagttaacaaggatatttccttactggtggtggaagatggtcagtacgtcgaa
gccggaaccgaggtcgttaaggatattttcacctctatcagtggggtagttgaagtcatc
gctaaaaacgatattctccgcgaaatcatcattaaacccggagaattttacctcgatgat
agtggcttggggtcttctggccatacaatcgccaacggagatttagttcccccaggaaca
gaagtgttaccggggatagtgacagaagaactccactatgccgagtgggttgaaagtaca
gaaggggtcggactgttactgcgtcccgtagaggagttcccggtgtccgattcgccagcc
actcctaaacaggggtcgattaatgccagtggtggacgacaaattgagttacggtctgtt
caacgcatcttttataaggatggagaacgggttaaatccgttgacgggactcaattattg
agtacccaattggtcttagaaatcgaggtggattcttctgaacatactcctcacctgacg
gccgatattgaattgaaggaagatcccaagattgaaggaactcgcctacagttggtgatt
ctcgaatctttggtcttgcggcgggatcttgatactgacccccatggtggattgattaag
acgaatgtgttggtcaaaaacggtgaacaaatccctccaggggcggttgtagcagcgacg
gagattcaatgttctgtcggtggtgaagtccgagggattaagcaaggaattgaagccatt
cgtcggattttaatcgttcgggatgaagataaggcaaggctggttctggatactcctcca
tcggttggggtgaatagcttgattgtggaatcaggagaattagcccctggtatgccttca
gacgtgagtgggcgggtaatagccgttaatcctcttggagattcggggcaatttgagtta
attctccgtaaagcccgtccctatcgggtgtcagccggggcaattttacacattgacgat
ggcgatttagtccaacggggcgataatttggtgttattggtgtttgaacgctcaaaaacc
ggggacatcatccaagggttgcctcggattgaagagttattggaagcccgtaagcccaaa
gaagcctgtattttagcccgcaaacccggggtaactcaggtggagtatttggaagatgag
tcggtggatgtcaagattattgaggaggatgggacgattagtgagtatcctattctgcct
aatcaaaacgtcttggtatctgatggaacccgggtcgatgtgggtgaacccatcactgac
ggaccggctaatccccacgaaattcttgaggtcttcttcaactattatgtggatcggttg
ggggtttatgaagcagccttgaagggactgcgggcggcacagcagtttctggtggatcag
gtgcaaacggtgtatcagtcccaggggattgatatttctgataagcatattgaggtaatt
gtgcgtcagatgacctctaaagtccgggtggacgatggcggtgatacgacgatgttaccc
ggagaattggtggaattgcgccaaattgaacaggtcaatgaagccatggcgattacaggg
ggtgctcctgcccggtatacgccgattttattgggaattaccaaggcttccttgaatacg
gattcctttattagtgcggcttccttccaagagacaacccgggtattaaccgaagcggcg
atcgaaggtaagtccgattggctacggggactcaaggaaaacgtgattattgggcgtttg
atcccggccggaaccggattccatctgtcggaggatctttcgaccatagaaccggaattt
gagtcagaacggccgagtcgttctccttcctatagtcgggaatttgagcggtcttcggga
gagtcgaaccatccgaatcgtttgttaggctctaatttagacgaggtcgatgagaacatg
gtactcgatgataatatcgcccgtgcctatgctgaaggagatgccccctggtcctatgat
gtggatgatgatgatgatgatgagtttgatgatgacgacgattaa
DBGET
integrated database retrieval system
