Rippkaea orientalis PCC 8802: Cyan8802_4337
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Entry
Cyan8802_4337 CDS
T00968
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyh
Rippkaea orientalis PCC 8802
Pathway
cyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan8802_4337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyh03019
]
Cyan8802_4337
03009 Ribosome biogenesis [BR:
cyh03009
]
Cyan8802_4337
Enzymes [BR:
cyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cyan8802_4337
Messenger RNA biogenesis [BR:
cyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyan8802_4337
Ribosome biogenesis [BR:
cyh03009
]
Prokaryotic type
rRNA helicases
Cyan8802_4337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
DUF4404
Motif
Other DBs
NCBI-ProteinID:
ACV03123
LinkDB
All DBs
Position
4485764..4487221
Genome browser
AA seq
485 aa
AA seq
DB search
MTISFQSLGLSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLP
ILEQVDVKNPNVQALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLER
GVQIVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTA
CFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELE
APESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATD
IAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERK
LRQQLEICQIPSRSQVESKRLEKLQRQIQESLAGERMASFLPIVRELSAEYDPQAIAAAA
LQMVYDQDCPNWMKTDWEVPEASVPKPVIKRKPSPNNNGGKYNRRSQAPQRSGGSDRKVV
THNHN
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaccatttctttccaaagcttaggactctctgaaacccgcgccaaccaattagaagcg
atcggctttaccagtcctactgaaattcaacaaaaagccattcctttacttttagaaggc
catgatattttaggtcaatcccaaacaggaacgggaaaaactgcagcctattcgttacct
attcttgaacaagttgatgtcaaaaatcccaacgtacaagcccttattttaacccccacc
cgcgagttagcccaacaagtagccctcgccctcaaagatttctccactgaacgccgactc
tacatcttaacggtttatggtggtcaatccattgaaagacaaatccgcagtttagaacgg
ggtgtgcaaattgttgttggaacccccggacgggttatcgatctattagaccgcaaaaaa
ctcagcttcgagggcttacgttgggcagtccttgatgaagccgatgaaatgctgagtatg
ggctttatcgacgatgtgaagaagatcctcaaacaaacccccgacacccgtagtacggct
tgtttttctgccaccatgccccgcgaaattcgggaattggtcaaccagttcctcaaatct
cccgttaccgttgcagtagaacagccccaggcagccccatcaaaaattgagcagcatctt
tataacgttccccgtggttggtcaaaacttaaagccctacagcctattttagaacttgaa
gcccccgaatcagccattatttttgttcggacaaaacagacggcggcggaattaacctgc
aagttacaagaagccgggcagagtgtggatgaatatcacggcaatttgagtcaatctcaa
cgggaacgcctagtttatcgcttccgtgaaggcaaaattaagctggtggtagcaacggat
attgcagcgcgggggttagacgtggaaaatttaagccacgtcattaactacgacttaccc
gataatgcagaaacctatattcaccgcattggacggactggacgcgcgggtaaaacggga
acggcgatctctttggtggaaccgattgatcgtcgcatgatcaagcaaattgaacgtaaa
ttacgccagcaactggaaatttgtcagattcctagtcgttcccaagtggagtcgaagcga
cttgaaaaattacaacgccagattcaagaatccttagccggagaacggatggcttctttc
ttgcccatcgtccgagaattgagtgcggaatatgatcctcaagcgatcgcagccgcagcc
cttcagatggtttacgatcaagattgtcccaactggatgaaaactgactgggaagtgcct
gaagcaagcgtacccaaacccgttattaagcgcaaaccgtctcctaataataatggtggt
aaatacaaccgtcgcagtcaagctcctcaacggtctggtggttctgatcgcaaggtagtc
acccataatcacaattaa
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