KEGG   Rippkaea orientalis PCC 8802: Cyan8802_4392
Entry
Cyan8802_4392     CDS       T00968                                 
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
  KO
K03090  RNA polymerase sigma-B factor
Organism
cyh  Rippkaea orientalis PCC 8802
Brite
KEGG Orthology (KO) [BR:cyh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cyh03021]
    Cyan8802_4392
Transcription machinery [BR:cyh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Cyan8802_4392
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r4_2 Sigma70_r3 HTH_24 Sigma70_ECF SpoIIID KORA HTH_23 HTH_Crp_2 HTH_3 HTH_30 HTH_28 HTH_Tnp_ISL3 HTH_8 HTH_Tnp_4 HTH_17 Trp_repressor HTH_AsnC-type HTH_11 HTH_50 HTH_37
Other DBs
NCBI-ProteinID: ACV03177
LinkDB
Position
4537339..4538115
AA seq 258 aa
MSTPIKENLKLDTLRLFLDYQKTGSIQLRNQILELNFGLVRKEAYHWVNHCSESYEDLLQ
VGSLGLIRAIERFNSEKGHAFSSFALPYIRGEIQHYLRDKGYTVRIPRRWLEIGQQVKSI
KQDFRERFNRQPTDSEIAQILEIPLKEWQEIQLAFQNREPLSLDLKVGNDSDGQTSLADL
VPDPNYRSFQLSQEDQIRLQQGLAQLEERTRRILEFVFLQDLTQRETAEQLGISVVTVSR
RVKKGLEILKQTMTAEIW
NT seq 777 nt   +upstreamnt  +downstreamnt
atgtctacccccatcaaagaaaatttaaaactcgatactcttcgtttatttctggattat
caaaaaacgggaagcatccaactgcgtaaccagattttggaactcaattttgggttagtt
cgcaaagaagcataccattgggttaaccattgttctgaaagctatgaagatttgttacaa
gttggctcattaggactcattcgagccattgagcgttttaatagcgaaaaaggtcatgcg
tttagttccttcgcgctgccctacattcggggagaaattcaacactacctgcgggacaaa
gggtataccgttcgtattccccgacgctggttagagataggacaacaagtcaaaagcatt
aaacaagactttcgcgaacggttcaaccgtcaaccaacggattcagaaattgctcaaatt
ttggaaattcccctgaaagagtggcaagaaattcaactcgcttttcaaaaccgtgaaccc
ctcagtctggatcttaaagtcggtaatgacagtgatggacaaaccagcttagcggattta
gttcctgatcccaactatcggagttttcaattaagtcaagaagatcaaattcgtttacaa
caaggattagcacaattagaagaacgcacacgacgaattttagaatttgtgtttcttcag
gatctcactcaacgggaaacggccgaacaattggggattagtgtcgtgactgtctctcga
cgggtgaaaaaaggactagaaatcctcaaacaaaccatgacggcagagatctggtaa

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