Rippkaea orientalis PCC 8802: Cyan8802_4440
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Entry
Cyan8802_4440 CDS
T00968
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cyh
Rippkaea orientalis PCC 8802
Pathway
cyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan8802_4440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyh03019
]
Cyan8802_4440
03400 DNA repair and recombination proteins [BR:
cyh03400
]
Cyan8802_4440
Enzymes [BR:
cyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cyan8802_4440
Messenger RNA biogenesis [BR:
cyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyan8802_4440
DNA repair and recombination proteins [BR:
cyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cyan8802_4440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACV03225
LinkDB
All DBs
Position
4589809..4591266
Genome browser
AA seq
485 aa
AA seq
DB search
MNPEKRTWEQVYQAFQRIWGYKDFRPPQGEIIRCLLASQDTLIVMPTGGGKSICFQLPAL
LQKGLTLVISPLVALMENQVKELQERNLPTALLHNEIPRNQRKDTLKLIATQQLRLLYLS
PETLLSLPVWEILINPNLIINGIILDEAHCLVQWGETFRPAYRRLGTIRSALLKHKPPET
KIAIAAFTATANPNDQGIISSVLHLENPQVFCLNPYRSNFNLQVKIAWSPRCRRHLLLNF
IQSKKQQSGLIYVRSRRDSEALAQWLNSLQNNTASYHAGLSPQQRREIEEKWLKNELQFV
VCTSAFGMGINKADVRWVIHFQPPSLLSEYLQEIGRGGRDGKPTDVLMLMSEPTGWLDPT
DKQRQQYFMQKLEQQNQEAKRLINQIPKQGNIQAIAQEFPQGEITLSLLHSQRKLEWLDP
FHYRIKSTQVNANSSNSKSNQLIYYSQIKQYLRIRDCRWQFLLKSFGFHQDAKNFRCGHC
DNCRG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagaaaaacgcacttgggaacaagtttaccaagcatttcaacggatttggggt
tacaaagattttagaccccctcaaggcgaaattatacgctgtttattagcttctcaagat
accttaattgtgatgccaacgggtggaggaaaatctatttgttttcaacttcccgcttta
ttgcaaaaggggttaactttagtgatttctcctttagttgctttaatggaaaatcaggtt
aaggaactacaagaacgcaacctccccacagcgttactccataatgaaattcctagaaat
caacgcaaagataccttaaaattaattgctactcaacaattaagattactttatttatcc
ccagaaaccttattgagtcttcctgtttgggaaatattaattaatcccaacctaatcatt
aatggaattattttagatgaggcacattgtttagtgcaatggggagaaacttttcgtcct
gcttatcgtcggttagggacaattagaagcgcattattaaagcataaacccccagaaacg
aaaatagcgatcgctgcttttactgctacggcaaatcctaacgatcaagggattattagt
tcagttttacacttagaaaatcctcaagtcttttgtttaaatccctatcgttctaacttt
aatcttcaagtcaaaattgcttggagtcctcgctgtcgtcgtcatttattattaaacttt
attcaatctaaaaaacagcaatctggcttaatttatgtccgttcccgtcgggacagtgaa
gccttagctcaatggctcaattctttacaaaataacacggcttcttaccatgcaggatta
agtcctcaacaacggcgagaaattgaagaaaaatggttaaaaaatgagttacaattcgtt
gtttgtacctctgcttttgggatgggaattaataaagccgatgtccgttgggtaattcat
tttcaacccccatccttactatcagaatatctacaagaaataggacggggaggacgggat
ggaaagccgacagatgtcttgatgttaatgagtgaacccacaggatggcttgatccaacg
gataagcaaagacaacagtattttatgcaaaaattagagcaacaaaatcaagaggcaaaa
cggttaattaaccagattcctaaacagggaaatatacaagcgatcgcacaggaatttccg
caaggagaaatcaccctctcattattacatagtcagcgaaaactagaatggttagatcct
tttcattatcgaattaaatcaacacaagttaatgctaattcatctaactcaaagagtaat
caacttatttattattctcaaataaagcaatatttaagaatccgtgattgtcgctggcaa
ttcttactcaagagttttggttttcatcaagatgctaaaaactttagatgcggacattgt
gataattgccgaggttaa
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