Cyanobium sp. NIES-981: CBM981_0585
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Entry
CBM981_0585 CDS
T04888
Name
(GenBank) Exoribonuclease, VacB/RNB family protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cyi
Cyanobium sp. NIES-981
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cyi03016
]
CBM981_0585
Enzymes [BR:
cyi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBM981_0585
Transfer RNA biogenesis [BR:
cyi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CBM981_0585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
SBO42296
UniProt:
A0A182AKE3
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All DBs
Position
I:499215..501209
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AA seq
664 aa
AA seq
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MKDERGSHLAVVLQDHGSKLDLSVGFQHRHQQLPRRTATLLVPFTDGGDPPVRLGLPPWT
FTDQDLAEALPPRRDFAAAWLLLADGDQAWALPEWVELVCSRSDPAALAACWLWLHGSQL
LFRLRHQGISARSPDDLRRLRREQHRLALDQRSQRQWHEALRRREPLRRSSLGPQQEREL
DLLLAVAAGQDATDLPVPLRRALQAAHCPADSGGVRHLLVDLGQWDPHHLPSLHATTWET
GFSAELEAEAQRLIAQASEARPGDDDRLDLTAQHCVTIDDADTRDIDDALGLERCPDGAL
RLWIHIADPGRLVAVDSPLDLEARRRGSSLYLASGTLPMFPEALATGPLSLGAGRRNAAW
SLAVVLDPEGAVTTFRLVRSWVRPTYRLSYADADELIDLAPPEDPDLADLHALLNRRRRW
RTARGAILMDQPEGRIRVRDGQPELELTEPSAARLMVAEAMILAGAVVAAYGEEHHLALP
YRSQMPAELPRPAELEALPAGPVRHAAIKRCLSRGHTGATPRAHFTLGLPAYVQATSPIR
RYGDLVAQRQLLALQQGQTPLDADALQALLQEIEDPIRQGLQISREDQRHWQQEWFSRQG
ACQWQGQFLRWLRAQDQLGLVHLEELAMDLAALCPAGSEPGDALIVRVQLVDPLRDQLRL
IASS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacgagcgcggttcccatctggcggtggtgctgcaggaccatggctcgaagctc
gacctctccgtcgggtttcagcacagacatcagcagctgccccggcgcacggccaccctg
ctcgttcccttcaccgatggcggcgacccgcccgtcaggctgggcctgcctccctggacc
ttcacggaccaggatctggcggaagccctgcccccccggcgggacttcgccgccgcctgg
ctcctgctcgccgatggcgaccaggcctgggccttgccggagtgggtggagctggtgtgc
agccgcagcgatcccgcagcgctggcggcctgctggctgtggctgcatggctcccagctc
ctgttccgtctgcgtcatcagggcatcagcgcccgctctcccgacgacctgcggcgactg
cggcgtgagcagcaccgtctggcgctcgatcagcggagccagcggcagtggcatgaggcc
ctcaggcgccgggaaccgctgcggcgttcctcgctcggcccccagcaggagcgggagctg
gatctgctcctggccgtggcggccggccaggatgccacggacctgccagtgccgctgcgc
cgggcgctccaggccgcccactgcccagcggacagcggtggcgtccgccacctgctggtg
gatctgggccagtgggatccccatcacctcccctccctgcacgccaccacctgggagacg
ggcttcagcgccgagctggaggcggaggcccagcggctgatcgcccaggcctccgaggcg
cggcctggggatgacgatcgcctcgacctcaccgcccagcattgcgtcacgatcgatgac
gccgacacccgggacatcgacgatgccctcgggctggagcgttgtccggacggcgcgctc
cgcctgtggatccacatcgccgatccgggccgtctggtggccgtggattcgcccctggat
ctggaggcccggcggcggggcagcagcctctatctcgccagcggaaccctgccgatgttc
cctgaggcgctggccaccgggcccctcagcctcggcgccggacggcgcaacgcggcctgg
agcctggcggtggttctcgatcccgagggggccgtcaccacgttccggctggtgcgcagc
tgggtgcgtcccacctaccgcctcagttacgccgatgccgatgagctgatcgatctggcc
ccacccgaggatccggatctcgccgatctgcatgccctgctgaaccggcgtcgccgctgg
cggactgcccggggggccattctgatggaccagcccgagggcaggatccgcgtgcgggat
ggccagcccgaactggagctgaccgaaccgagtgcggcacgcctgatggtggccgaggcc
atgatcctggccggcgcggtggtggccgcctacggagaggagcaccacctggccctgcct
taccgcagccagatgcccgccgagctgccgcgaccagccgaactggaggcgctgcccgca
ggcccggtgcgccatgccgccatcaagcgctgcctcagccgcggccataccggggcgacg
ccccgggcccatttcactctggggttgccggcctacgtgcaggccacctcaccgatccgc
cgctatggcgacctggtggcccagcgtcagctgctggccctgcagcagggccagaccccc
ctggatgccgatgccctgcaggccctgctgcaggagatcgaggatccgatccgccagggc
ctgcagatcagccgggaggatcagcggcactggcagcaggagtggttctccaggcaaggg
gcgtgccagtggcagggccagttcctgcggtggttgcgggcccaggaccagctcggattg
gtgcatctcgaggagctggccatggatctggcggccctctgtccggcggggtccgagcct
ggagatgccctgatcgtgcgcgtgcagctggtggatcccctgcgggatcagctgcgcctg
atcgcctcctcctga
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