Cyanobium sp. NIES-981: CBM981_1159
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Entry
CBM981_1159 CDS
T04888
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cyi
Cyanobium sp. NIES-981
Pathway
cyi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CBM981_1159 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyi03400
]
CBM981_1159 (recD)
Enzymes [BR:
cyi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CBM981_1159 (recD)
DNA repair and recombination proteins [BR:
cyi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CBM981_1159 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
AAA_11
UvrD_C_2
Viral_helicase1
AAA_22
UvrD-helicase
AAA_5
NAT10_TcmA_helicase
PIF1
AAA_16
AAA
SH3_13
SLFN-g3_helicase
TrwB_AAD_bind
nSTAND3
Pif1_2B_dom
AAA_7
AAA_28
Motif
Other DBs
NCBI-ProteinID:
SBO42870
LinkDB
All DBs
Position
I:1052730..1054400
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AA seq
556 aa
AA seq
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MTAPTSAPTPAATPAPAQAPQTPAWLDALTGGLVEALPRLHGCPPDPAIEATLAAMAHLL
AAGELELVLPDPQQREQLAASPLCSGPWSPLVLEGDRLLWRRWFQQREAVLEALCQRAGP
ARWQPCGLEEARQRAAAQGEGLDADQRGAVAAALHYGLVLLQGGPGTGKTSTVARMLAAL
RAHAPAARMQLAAPTGKAAARLRAALAGARGGSAMACSTLHRLLESQGERFGRHRHHPLD
LDLLVIDEVSMVDLELMGAVLEALPSSCRLVLVGDAAQLPPVRPGAVLLELQTPRRREAL
GGAVVELHTTYRNNGAIAQVADQLRWQGAAAADAEPSGSWRALCPTLERLPATANLHWLP
ASPLHLPPALLERLRRHQRALQRQAQALESGDHAAARALLKQLDALLVLSPARRGRWGVE
AVHRALLGEALEQPIQAWPAGTPVLCQRNLPAPGLANGDVGIVVDAAGTAGASHGQASAG
RRLLFAPGGGSELLWLHPAQLPDPQPALALTVHKAQGSEAEEVWVLIPDSGRPTDRLLYT
ALTRARQQAHLITPPP
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacggcacccacctcagcgccgactccggccgcgactccggcaccagcccaggcgccg
cagactccagcctggctggacgccctcacgggcggactggtggaagccctgccgcggctg
catggctgcccccccgatcccgccatcgaggcgacgctcgccgccatggcccacctgctg
gccgccggtgagctggaactggtgctgcccgacccgcagcagcgggagcagctggccgcg
tccccgctgtgcagcgggccatggagtccgctggtgctcgagggtgaccggctgctgtgg
cggcgctggttccagcagcgggaggcggtgctggaggccctgtgccagcgggccggacca
gcccgctggcagccctgcggcctcgaggaggccaggcaaagggctgccgcccagggtgag
ggcctggatgctgaccagcggggggccgtggccgcggcgctgcactacgggctggtgctg
ctgcagggcggaccgggcaccggcaagaccagcaccgtggcccgcatgctggcagccctg
cgcgctcacgctcccgcagcccgcatgcagctggcggcacccaccggcaaggcggcggca
cggctgcgtgccgcccttgccggcgcccggggcggctccgccatggcctgcagcacgctc
caccggctgctggagagccagggagagcgtttcggacgccaccgccaccacccgctcgat
ctcgacctgctggtgatcgacgaggtgtcgatggtggatctggagctgatgggcgccgtg
ctggaggccctgccgtccagctgccgcctggtgctggtgggcgatgccgcccagctccca
ccagtgcggccgggagctgtgctgctggagctgcagacccctcggcggcgtgaggctctg
ggtggggccgtggtggagctgcacaccacttaccgcaacaacggcgccatcgcccaggtg
gcggaccagctgcggtggcagggagcggcagcggcagacgccgagccttccggcagctgg
cgcgccctgtgccccaccctggagcggctgccggccacggccaacctgcactggctgccg
gcctcgcccctccacctgccccccgccctgctggaacggctgcggcggcaccagcgggcg
ctgcagcgccaggcccaggccctggagagcggcgaccatgccgcggccagggccctgctg
aaacagcttgatgccctgctggtgctgagccccgcgcggcgggggcgctggggggtggag
gcggtgcaccgggccttgctgggcgaagcgctcgagcagccgatccaggcctggccggcc
ggcaccccggtgctctgccagcgcaatctccctgccccggggctggccaacggggatgtg
ggcatcgtggtggacgcggccgggacagccggggcctcccacggacaggccagcgccggg
cggcggctgctcttcgccccggggggcggcagtgagctcctgtggctgcacccggcccag
ctgcccgatccccagccggccttggctctcacggtgcacaaggcccagggcagcgaagcc
gaggaggtgtgggtgctgatccccgacagcggccgtcccacggaccggctgctctacacc
gcgctgacccgggcgcggcagcaggcccacctgatcaccccgccgccctga
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