Cyanobium sp. NIES-981: CBM981_1161
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Entry
CBM981_1161 CDS
T04888
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyi
Cyanobium sp. NIES-981
Pathway
cyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBM981_1161 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyi03019
]
CBM981_1161 (deaD)
03009 Ribosome biogenesis [BR:
cyi03009
]
CBM981_1161 (deaD)
Enzymes [BR:
cyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBM981_1161 (deaD)
Messenger RNA biogenesis [BR:
cyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBM981_1161 (deaD)
Ribosome biogenesis [BR:
cyi03009
]
Prokaryotic type
rRNA helicases
CBM981_1161 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
CMS1
B12-binding
DEDD_Tnp_IS110
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SBO42872
LinkDB
All DBs
Position
I:1055085..1056986
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AA seq
633 aa
AA seq
DB search
MQAPLTSVTEPISGISSLCPESSSETGVTTAALGDSPLNQPPTEAATSADPGSGASAPSS
EAAAASTSTASGGFAGFGFGPEILQALETIGYSEPSPIQKAAIPELMLGRDLVGQAQTGT
GKTAAFALPLLAGLDPDQRKPQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGAD
FRDQIHHLRRGAQIVVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVL
GQLPEQRQVVLFSATMPAEIRRISQQYLNSPAEITIRTKAADASRIRQRFLTVPAPLKLA
ALERVLESESSEGVIIFARTKAITVTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKTG
QVDVLVATDVAARGLDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRER
RFLGGLERAAGKPIEPMEVPSNATINQNRLDRLRQRLTNALHQSAISAEEQALLSEIVQR
VAQEQSCSPEQLALAALELSLGGKSLLLHGNDDFSQARSQGLNRRDGRESRDSREFGNRE
PRRSRSERPVGAPEADMERFRVELGWRDRIKPGNLVGAIANETGLQGRAIGRIQIFDTHS
VIDLPKGMPEDIFQGLRSLRVLNKPLQISRFRG
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggccccattgacttccgtgaccgaaccgatcagcggcatttcttcgttgtgtcct
gaatcctccagcgaaaccggcgtgaccactgctgcgctgggcgattcccccctgaaccag
ccgcccactgaggccgccaccagcgctgaccccggcagcggcgcatcagccccctcttcc
gaggctgcggccgccagcacctcaaccgcctccggcggattcgcgggcttcggcttcggc
ccggagatcctgcaggcgctcgagaccatcggctacagcgaaccctccccgatccagaag
gccgcgatccccgagctgatgctcggccgggacctggtgggccaggcccagaccggcacc
ggcaagaccgccgccttcgccctgccgctgctggccggtctggatccggaccagcgcaaa
ccgcaggtgctcgtgctggcccccacgcgggagctcgccctgcaggtggctgagtcgttc
aacagctatgcggcccagcttccccaggtgcgcacggtggcggtgtacggcggtgccgac
ttccgcgatcagatccaccatctccggcgcggcgcccagatcgtggtgggcacccccggg
cgggtgatggatcacatgcgccagggaaccctcgatctctccgagctccgttcactggtg
ctcgatgaagccgatgagatgctccggatgggcttcatcgacgatgtggagtgggtgctc
ggccagctgccggagcagcgccaggtggtgctgttctccgccacgatgcccgctgaaatc
cggcgtatttcccagcagtacctcaacagccctgccgaaatcacgatccggaccaaggcc
gcggacgcgagtcggattcgtcagcgtttcctgaccgtgccagcccccctcaagctcgcc
gccctggagcgggtgcttgaaagcgagagcagcgagggggtgatcatcttcgcccgcacc
aaggccatcaccgtcacggtggccgagtcgctggaggcccacggctacgacgtggccgtc
ctcaacggggacgtgccccaggcccagcgcgaacgcacgatcgaacggctcaagaccggc
caggtggatgtgctggtggccaccgacgtggccgccaggggcctggatgtggagcgcatc
ggcctggtgatcaactacgacatccccttcgacggcgaggcctacgtgcaccgcatcggc
cgcaccggtcgcgccggtcgcagcggtgaggccatcctcttcctcaccccgcgcgagcgg
cgtttcctgggggggctggagcgggctgcgggcaagccgatcgaaccgatggaggtgccc
agcaacgccaccatcaaccagaaccggctcgaccgcctgcgccagcgcctcaccaacgcc
ctccaccagagcgctatcagcgccgaggagcaggccctcctgagcgagatcgtgcagcgg
gtggcccaggagcaatcctgcagccctgagcagctcgcgctggcagcgctggaactgagc
ctcggtggcaagtcactgctgctccacggcaacgatgacttcagccaggcgcgctcccag
ggtctgaaccgccgcgatggccgggagagccgcgacagcagggagttcggcaaccgggaa
ccgcgccgcagccgcagcgagcgccccgtgggcgcacccgaagccgacatggagcgtttc
cgggtcgagctcggctggcgcgaccgcatcaagccgggcaatctggtgggcgcgatcgcc
aacgagaccggcctgcagggccgggcgatcggccggattcagatcttcgacacccacagc
gtcatcgatcttcccaaggggatgcccgaggacatcttccaggggctgcgcagcctcagg
gtgctgaacaagcccctgcagatctcccgcttccggggctga
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