Cyanobium sp. NIES-981: CBM981_2352
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Entry
CBM981_2352 CDS
T04888
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cyi
Cyanobium sp. NIES-981
Pathway
cyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBM981_2352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyi03019
]
CBM981_2352
Messenger RNA biogenesis [BR:
cyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBM981_2352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
SBO44051
LinkDB
All DBs
Position
I:complement(2139719..2141728)
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AA seq
669 aa
AA seq
DB search
MSSSNGRSSTHTKQPALRVIPLGGLHEIGKNTCVFEYGDDIMLVDAGLAFPSDGMHGVNV
VMPDTSYLKENQKRIRGMIVTHGHEDHIGGIAHHLKNFTIPVIHGPRLALSMLTGKMEEA
GVMDRTILQTVAPRDVVKVGQYFSVEFIRNTHSMADSFSLAITTPVGTVIFTGDFKFDHT
PVDGEHFDMARLAHYGDQGVLCLFSDSTNAEVPGFCPPERSVFPKLDQHIAQAEGRVIIT
TFASSIHRVAMVLELAMKNGRKVGLLGRSMLNVIAKARELGYMRAPDDLFVPIKQIRDLP
DRETLLLMTGSQGEPLAALSRISRGEHPQVQVKSSDTIIFSASPIPGNTISVVNTIDRLM
MLGAKVVYGKGEGIHVSGHGFQEDQKLMLALTKPKFFVPVHGEHRMLVAHAKTGMSMGIP
PENTLIIDNGDVVELTPDSIRRGDPVKAGIELLDASRNGIVDARVLKERQQLAEDGVITL
LAVISTDGVMAAPPRVNLRGVVTTADARKLSLWAEREITWVLENRWSQLSRNTGGKAPDV
DWVGVQREVELGLQRRLRRELQVEPLIICLVQPAPAGTPAYKGRADAEPDSRPAPRGRGG
RDGGRDSGRDGGRDSRGADRAPRRELAAVGAAAPAPAARAAVKVVPAPSANPEPEIAGRT
RRRRSAASR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccagttccaacggccgtagcagtacccataccaagcagcctgccctgcgggtgatc
cccctcgggggcctccacgagatcggcaagaacacctgcgtcttcgagtacggcgacgac
atcatgctggtggatgccggtctggcttttcccagtgatggcatgcacggcgtgaacgtg
gtgatgccggacaccagttatctgaaggaaaatcagaaacgcatccgcggcatgatcgtg
acccatggtcacgaggatcacattggcggtattgcccaccacctcaagaacttcactatt
ccagtgattcatgggccgcgcctggcgctgtccatgctcaccggcaagatggaggaagcc
ggggtgatggaccgcaccatcctccagaccgtggccccacgcgatgtggtgaaggtgggg
cagtacttctccgtggagttcatccgcaacacccactcgatggcggacagcttttcgctg
gccatcaccacgccggtgggcaccgtgatcttcaccggggacttcaagttcgaccacacc
cctgtggacggtgagcacttcgacatggcccgcctcgcccactacggcgaccagggtgtg
ctgtgcctgttcagtgattccaccaatgcggaagtgccgggcttctgcccccccgagcgc
tcggtgtttccgaagctcgaccagcacatcgcccaggccgaggggcgggtgatcatcacc
accttcgccagctcgatccatcgcgtggcgatggttctggaactggcgatgaagaatggc
cgcaaggtgggcctgctgggccgctccatgctcaacgtgatcgccaaggcccgcgagctg
ggctacatgcgcgcccccgatgatctgttcgtgccgatcaagcagatccgtgatctgccg
gatcgcgaaaccctgctgctgatgaccggcagccagggcgagccgctggccgcgctgagc
cgcatctcccgcggcgagcatccccaggtgcaggtgaagtcgtcagacacgatcatcttc
tcggccagccccatccccggcaacaccatctccgtggtgaacaccatcgaccggctgatg
atgctgggtgccaaggtggtctacggcaagggcgagggcatccacgtgtccggccatggc
ttccaggaggaccagaagctgatgctggccctcaccaagccgaagttcttcgtgccggtg
cacggcgagcaccgcatgctcgtggcccacgccaagaccggcatgtcgatgggcattccg
cccgagaacacgctgatcatcgacaacggtgatgtggtggaactcacgcccgattcgatc
cgccggggggatccggtgaaggccggcatcgaactgctcgacgcctcccgcaacggcatc
gtggatgcccgggtgctcaaggagcgccagcaactggcggaagacggggtgatcaccctg
ctggccgtgatcagcaccgacggcgtgatggcggcgccgccgcgggtgaacctgcgcggg
gtggtcaccaccgccgatgcccgcaagctcagcctctgggccgagcgggagatcacctgg
gtgctcgagaaccgttggagccagctcagccgcaacaccggaggcaaggctcccgacgtg
gactgggtgggtgtgcagcgtgaggtggagctgggcctgcagcgccgtctgcggcgcgag
ctgcaggtggagccgctgatcatctgcctggtgcagcctgctcctgccggcacacccgcc
tacaaggggcgggccgatgccgagcccgacagccgtccggctccgcggggccggggcggc
cgtgatgggggccgtgacagtggccgtgatggcggccgggacagccgcggagccgaccgg
gctccccgccgggagctggccgctgtgggggctgcggcccctgctccggccgcgcgggct
gcggtgaaggtggtcccggcgcccagcgccaaccccgagcctgaaatcgccggccgcacc
cgccgccgccgttccgcggcgtcgcgctga
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