Gloeothece verrucosa: Cyan7822_0095
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Entry
Cyan7822_0095 CDS
T01310
Name
(GenBank) VacB and RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cyj
Gloeothece verrucosa
Pathway
cyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan7822_0095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyj03019
]
Cyan7822_0095
03016 Transfer RNA biogenesis [BR:
cyj03016
]
Cyan7822_0095
Enzymes [BR:
cyj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cyan7822_0095
Messenger RNA biogenesis [BR:
cyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cyan7822_0095
Transfer RNA biogenesis [BR:
cyj03016
]
Prokaryotic type
tRNA degradation factors
Cyan7822_0095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
OB_cyt-4
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ADN12147
UniProt:
E0UHK6
LinkDB
All DBs
Position
complement(104562..106814)
Genome browser
AA seq
750 aa
AA seq
DB search
MEFSIATLLSYFSHDKLVAAKVLEKKLGCEDEVSIYKLQIVLEALERIGVLVKERGKYRR
VYEENIVEAKLRCSSKGFCFAIQDIEDADDIYVRESHLSNAWNGDRVLVKIIKEGTRRRS
PEGEVKLILERANPSLLAQVKRNNGGYRAVPLDDRLLFELDLTHNEQQLENAVDHLVHVS
VLRYPIGEHPPLGQVTRILGSDAEAAADTDIVCCKHDLLHAFSESVLKAAQGLPRSFNKS
ELQKRQDLRKLLTFTVEDGVQRDHPTFIEQAFTLEKPKPGWWQLGIHIADVAHYIEQDSI
LDKAAKKRGTSIFLREKILPLLPEAVTERCSLIAGEDRLSISIFITLDQTGNVIEFETLP
SVIEVDYQFTYTEVQSLLSKSEQVEAHLVSIVEKLKEIFFTLCPLVKAQRLQRGSFEIQL
EKQSPFKDEGRGGTVLVSSNLPVQSLISELAILAGKIVAEHLRALGVPAIYCMQPDPDWE
ELEDLLKLANNLGLDVALSSEEEVTPHDYQNLTQAFSRSHAVKVLSYMLYSTLKQVKYTS
HPSPHFGLAYSDCYTHCIAPGQRYVDLLIQRVLKAVFAEGRDRPSKNAKITVNLGSNSCH
GQIKWNVLPPQLKDALEEDFHLIVSHLNDRDKVAEDAEKDLEGLKKAEKMKERTGQIFRG
LITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRARHSCLVGRKNRIAYRLGDEVEVE
VKNVDYYRQQIDLVTVGGGSALRSEDLDDD
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactattgtcctatttcagtcatgacaaattagtcgctgct
aaagttttagaaaaaaagctcggatgtgaagatgaagtaagcatctacaaactacagatc
gtcctagaggctttagagcgaatcggcgtattagtcaaagaaagaggaaaatatcggcga
gtttatgaagagaatatcgttgaagccaaattgcgttgttccagcaaaggattctgtttt
gccattcaagatatagaagatgcagatgacatctatgtaagagaaagccatctgagtaat
gcttggaatggtgatcgcgtcctggtcaaaattattaaagaaggaactcgtcgccgctct
ccagaaggagaagttaaactgattttagaaagggcaaatccctcgcttttagcacaagtt
aaacgcaataatgggggataccgagcagttcccttagatgatcgtctcttatttgaatta
gacctcacacacaatgaacaacaactggaaaacgccgtagatcatttagttcatgtttcc
gtattacgctatcccattggagaacatccgcccctaggacaagtcactcgcattctgggt
agcgatgccgaagccgccgccgacaccgatattgtctgctgtaaacacgatctgcttcat
gctttctcggagtcagttcttaaagccgcccaaggactgcccagaagctttaataaatct
gaactgcaaaagcgccaagatttaagaaagttgttaaccttcaccgttgaagatggcgta
caacgagaccaccccacttttatagaacaggcctttactctcgagaaacctaaacccggc
tggtggcaattggggattcacatcgctgatgtagcccattatattgagcaagattcgatt
ttagataaagcggcaaaaaaacgaggaactagcatctttttacgcgaaaaaatcttgcct
ttactgccagaagccgtgaccgaacgatgttctttaattgctggtgaagaccgtttaagc
atatccatatttatcaccctagatcaaaccggcaacgtcatcgaatttgaaaccctgccg
agtgtgattgaggtagattatcaatttacttatactgaagttcaatccctactcagtaaa
agcgagcaagtagaggctcatttagtctctattgtcgaaaaactcaaagagatctttttt
acgctatgtcccttagtcaaagcacaacgcttacaacgggggagcttcgaaattcaacta
gaaaaacagtctcccttcaaagatgaaggacgaggcggtacggtactggtatcttctaac
ctaccggtacaatcattaattagtgaattagccattcttgccggtaaaatcgtggctgaa
cacctgcgggccttaggagtacccgctatctactgtatgcagccggacccagactgggaa
gaattggaagatttactcaaattagccaacaatttaggtttagatgtggccttatcctca
gaagaggaagtgactccccacgactatcaaaacttaactcaagcctttagccgctctcat
gccgttaaagtgttaagctatatgctctattccaccttaaagcaagtcaaatataccagc
catccctctcctcattttgggttagcttactcagattgctacactcattgcattgcgcct
ggacaacgctatgtagacttattgatacagcgtgtcttaaaagccgtctttgctgaagga
cgtgatcgcccgagcaaaaatgctaaaatcaccgttaatctgggcagtaatagttgtcat
ggtcaaattaagtggaatgttttacctcctcagcttaaagacgctttagaagaagacttt
catctgattgtctcccatctcaatgaccgagataaagtcgcagaagatgctgaaaaagac
ctagaggggttaaaaaaagcggaaaaaatgaaagaacggaccggacaaattttccgaggc
ttaattaccggcgttcaatcctatggtttctttgtagaaatagaagatttgttagtggag
ggtttggttcatgtcagttccctgaaagatgattggtatgaataccgcgcccgtcatagc
tgtttagtcggacggaaaaatcgcatcgcttatcgtctcggagatgaagtcgaagtggaa
gtgaaaaatgtagactattatcgtcagcaaattgatttggtgactgtaggagggggaagc
gccctcagaagtgaagatttagatgatgactaa
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