Gloeothece verrucosa: Cyan7822_2144
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Entry
Cyan7822_2144 CDS
T01310
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cyj
Gloeothece verrucosa
Pathway
cyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan7822_2144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyj03019
]
Cyan7822_2144
03009 Ribosome biogenesis [BR:
cyj03009
]
Cyan7822_2144
Enzymes [BR:
cyj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cyan7822_2144
Messenger RNA biogenesis [BR:
cyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cyan7822_2144
Ribosome biogenesis [BR:
cyj03009
]
Prokaryotic type
rRNA processing factors
Cyan7822_2144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ADN14124
UniProt:
E0UDD3
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All DBs
Position
complement(2379906..2381870)
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AA seq
654 aa
AA seq
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MPKQIIIAEQHHIAAVFWEDQIQELVVATGNQQVGDIYLGLVENVIPGIDAAFVNIGDAE
RNGFIHVTDLGPLRLKKTAGAITELLAPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLV
LMPYGRGVNLSRRIRNEDERSRLRALAILVKPAGMGLLVRTEAEGKAEEAIMEDLEVLQK
QWELIQQQAASTRPPVLLNRDDDFIQRVLRDMYTSDVNRIVVDTPASVKRVKQHLIGWSG
GRSPEGVVIDYHRESQSVLDYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATSRETVLWTNSEAATEIARQLRLRNIGGVIVVDFIDMDSRRDQLKLLEHFNKAL
KADKARPQIAQLSELGLVELTRKRQGKNIYELFGQPCPTCSGLGHLAHLPGESDVVSLET
LSFSPPPTVPAVTHAPRLPEKPIIEPEPSFDANYDDGDETSQQMDLLYHPNYQDQGLAAA
RRRRRRRSNDLIKEEGGTKILPGIPERELDLEYEPPREDRRERGVRNQRRDEMPLERVSV
EMSDLEQDVYSEMGISPLILLEREFKDPRTVIVSVKPKDKETREIREITSVSEPVVNSVS
PISEIAQPETELIPTVEDNGSIEEDFFAHEEDQDSSDDRPVIRRRRRRSSAATN
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattattatcgcggagcagcatcacattgcggctgttttctgggaagat
caaattcaagaattagtcgttgctacaggcaatcaacaagtaggagacatatatttaggc
ttagtagaaaatgtaattcccggaatagatgcagcatttgttaatattggggatgcagaa
cgcaatggatttattcatgtaacagatttagggcctctacgcctgaaaaaaacagccgga
gccattacagaattattagcccctcaacaaaaggtgctagtacaggtgatgaaagaaccc
accggcaataaaggcccacgtctgacgggaaatattaccttacccggacgctatttagtc
ttaatgccctatggcagaggagtaaacttatctcgacgcatcagaaacgaagatgaacgc
agccgcttaagagccttggctatattagtgaaaccagccggcatggggcttttggttcgc
actgaggcagaaggaaaagccgaagaagcgatcatggaagacctagaagtgcttcaaaag
caatgggaactgattcaacaacaagcggcttcaacccgtccgccggtcctcttaaaccga
gatgatgactttattcaacgggtgctgcgggatatgtatacctcagatgtcaaccgcatc
gtggtagatacccccgcctcagttaagcgagtcaaacagcatttaatcggatggagtgga
ggacgctcacccgaaggggtggtgatcgactatcatcgagaatctcaatcagtcttagat
tattttcgcgttaacgccgctattcgagaagcccttaaaccgagagtagatttaccctcg
ggaggctatattatcatcgaacccaccgaagcgttaaccgtcattgatgttaactccggt
tcgtttactcgttcagctacttctcgagaaaccgtactctggaccaatagcgaagccgct
acagaaattgcccgtcagctacgactgaggaatatcgggggagtcatcgtggtagacttc
atcgatatggactcccgccgcgatcaactgaaactactagaacattttaataaagccctc
aaagccgataaagctaggccccaaatcgcccaactctcagaattgggtttagtggaatta
acccgcaaacgtcaagggaaaaatatttatgaactatttggtcaaccctgtcccacctgt
agcgggttaggccatttagctcatctgccgggagaatcagatgtcgttagtctagaaact
ctctcctttagcccaccgcctaccgtaccggcagtaactcacgcgcctcgactacccgaa
aagccaattatcgaacctgaacccagttttgatgctaactatgatgatggggatgaaact
tctcaacaaatggacttgttgtatcatcctaactatcaagaccaaggcttagcggctgcc
cgtcgtcgtcgccgtcgtcgttctaatgatctgattaaagaagaaggcggtacgaaaatt
ttgccgggcattcctgaacgggagttagatctagaatacgaaccccctcgagaagataga
agagagcgaggagtcagaaatcaaagacgggatgagatgcctttagaaagggtatctgtg
gaaatgtcggatttagagcaagatgtttactcagaaatggggatttctccgttaatactg
ttagaacgagaatttaaagaccctagaaccgtcattgtttctgtaaaacccaaagacaag
gaaactagggaaattagagagataacatctgtttcagaaccggtggttaattctgtctct
cccatttctgagattgctcaaccagaaaccgaattaataccaacggtagaagataatgga
agtatagaggaggatttctttgctcatgaggaggatcaggatagttctgatgatcgtcct
gtgattcgtcgtcgtcgtcgtcgttcttctgctgctaccaattaa
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