Gloeothece verrucosa: Cyan7822_3936
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Entry
Cyan7822_3936 CDS
T01310
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cyj
Gloeothece verrucosa
Brite
KEGG Orthology (KO) [BR:
cyj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cyj03016
]
Cyan7822_3936
Enzymes [BR:
cyj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cyan7822_3936
Transfer RNA biogenesis [BR:
cyj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cyan7822_3936
Prokaryotic type
tRNA splicing ligases
Cyan7822_3936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CP2
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ADN15866
UniProt:
E0UKA4
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All DBs
Position
4347470..4348651
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AA seq
393 aa
AA seq
DB search
MPYEQVKVSTPTPILSWANHPLGPKETQMAKNVACLPFVYKHVALMPDVHLGKGALVGSV
IATKDAIIPAAVGVDIGCGMAALAMPFRATQLEGKLKKIRLDLEAAIPVGFNENKDIEKA
VHNWQHWKEFKQLHSGVQDLQTKAIKQMGSLGGGNHFIELCLDEQEQVWLMLHSGSRNIG
NHLALCHISTAKQLAKLSQTSLPDADLAYFVAGTPEFAAYWRDLQWAQSYARFNREIMMS
RFKRIVEKHLAGGKPTKPLLSVNCHHNYAEKETHFDQQVYVTRKGAVRANLSDYGIIPGS
MGAKSYIVKGKGNTESFCSCSHGAGRLMSRNQAKEQFTLDDLIAQTQGIECRKDHGVLDE
IPAAYKPIDQVIAQQSDLVEIVAVLKQVVCIKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgaacaagtaaaagtttctacaccaacgccgattttatcttgggcaaatcac
ccgttagggccaaaagaaacccaaatggcgaaaaatgtggcttgtttaccctttgtatac
aaacacgtggctttaatgccagatgttcacctcggtaaaggcgctttagtgggttctgtg
attgccacgaaagatgctattattccggccgcagtgggcgtggacatcggttgtgggatg
gcggctttggctatgccctttagagcaactcaactcgaaggtaaactcaaaaaaattcgc
ttagaccttgaagcggctattccagtgggctttaatgaaaataaagacatcgaaaaagcg
gttcataactggcaacattggaaagagtttaaacaattacattcaggggtacaagattta
cagacgaaagccattaaacaaatgggatctttaggaggaggaaaccattttatcgaactg
tgtctcgatgaacaggagcaagtctggctgatgctacattccggttctcgtaatatcggt
aaccatctggctttatgtcatatttcaaccgctaaacagttagctaaattaagccaaacc
tcgttacccgatgcagatctcgcgtattttgtggcgggaacccctgaatttgcggcttac
tggcgagatttacaatgggcacaaagctatgctcgttttaatcgagaaattatgatgagc
cgctttaaacgcattgtggaaaaacatttggccggcggaaaacccactaaacccctatta
agcgtgaattgtcatcataattacgccgagaaagagactcactttgatcaacaagtctat
gttactcgcaaaggagccgtaagagcgaatttatcagattatgggattattcctggctca
atgggggctaaatcctatattgtcaagggaaaaggcaatacagaaagtttttgtagttgt
agtcatggcgcaggacgtttaatgtctcgtaatcaagccaaagagcaatttacccttgat
gatttgatcgcacaaacccaaggcattgaatgccgcaaagatcacggggttctcgatgaa
attccggcggcttataaacccattgatcaagtgatcgctcaacagtctgaccttgtagag
atcgtagctgtgttaaaacaagtggtttgtatcaaaggttaa
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