Cyanobacterium sp. HL-69: AA637_02580
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Entry
AA637_02580 CDS
T05309
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase beta'' subunit RpoC1
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyl
Cyanobacterium sp. HL-69
Pathway
cyl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AA637_02580 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyl03021
]
AA637_02580 (rpoC1)
03400 DNA repair and recombination proteins [BR:
cyl03400
]
AA637_02580 (rpoC1)
Enzymes [BR:
cyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AA637_02580 (rpoC1)
Transcription machinery [BR:
cyl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AA637_02580 (rpoC1)
DNA repair and recombination proteins [BR:
cyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AA637_02580 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AUC60111
UniProt:
A0A2K8WLY4
LinkDB
All DBs
Position
complement(542891..546754)
Genome browser
AA seq
1287 aa
AA seq
DB search
MSQNKEQSKKPQVFYNRIIDKGALKKLIAKTFTEFGSARCAAVCDQLKTMGFHYATQAAV
SISVEDLKVPDAKKMMLAEAETTIKTTMNRYANGEITEVERFQKVIDTWNDTSESLKDEV
VRNFRQSDPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTV
TEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRETDCGTHKGVWIEPMKDGD
RTLIPLGDRLLGRVLADDVVHPITGEVIALRNQSIDQDLAKIIGNTVEKVKVRSPLTCET
ARSVCQKCYGWSLAHGEWVNMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQRII
SPVAGKVKFDKKLKVRENRTRHGDQKLLVEVNGNLIIGDQKILVPVNSLLAVREGDEVIQ
EQLLAEVMPQKTRSTERVTKDVASDLAGEVIFQEVDPLTTTDRQGNNTITASRNGLIWVL
SGEVYNLPPNAEPVVKNGEKIKKNSVLAESKLKTKSGGVCRLEEGSREIEIITASVSLDQ
ADIFLEHHGNQQQYVIHTPRGDRFSLKVSPGTKVQNNQIVAELIDDTFTTETGGIMRYAG
LETGRGNKKQGYEVTTEGTLIWIPEESHEINKDISLLMVEDGQYVEAGTEVVKDVFCQSS
GIVEVIQKNDILREIIIKPGKLYMDLDPEHMATLEDGTILAPGTEIMAGITTEDECISEF
VDTNEGVGLLLRPMKQYEVINTTQSPSQESLNSAGGKINLRPVLRTFFKDGERVKSVEGV
QLVTTQLVLETTEGMSADIELIEDENNDDCFRLQIVVLESVMLRRELETEPNIVTTVTVS
DGQEIMPGDVVATTQILCQENGIIRGIREGVEAIRRILVVRENDIIEIETEGVLLKQEGD
FVTQGELIAEGVKAPDSGYVMETEGNTISLRHARPYRVSTGAILHIEQGDLVQRGDNLVL
LVFERAKTGDIVQGLPRIEELLEARKPKEPAILARRPGVCQVEYKDDEAIDVKVIEDDGT
ISEYSLGPNQNIIVGDDQRVNTGDSLSDGLVSPHELLEVFYDYYKEHMGAYDAALGAMQK
AQLFLVNQIQGVYQSQGIDISDKHIEVIVRQMTSKVHIDDGGDSIRLPGELVELRDIEKD
NETLSLTGGAPIEYTPKLMGITKSSLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLK
ENVIIGRLIPAGTGFNAYDENMDWEDTEVGAGNSNYLGIDDVSAEYEEQNYIIPDSEDVI
IDDKTARVLSPEDAIMDDDLIDDNYQS
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaataaagaacaaagcaaaaaaccccaagttttctataacagaattattgat
aaaggggctttaaagaaactcattgccaaaacctttaccgaattcggttcagcccgttgt
gcagcggtatgtgatcagttaaaaaccatgggttttcattatgctacccaagcagcggta
tctatcagtgtggaagatttaaaagtacctgatgccaagaaaatgatgttggcggaggca
gaaaccaccattaaaactaccatgaaccgttatgctaatggggaaattactgaggtagag
cgtttccaaaaggtaattgatacttggaatgatacttctgaatctcttaaagatgaggtg
gttcgtaacttccgtcaatctgaccccctcaactccgtctatatgatggcgttttctggg
gcaaggggaaatattagccaagtacgtcagttggttggtatgaggggcttgatggctgat
cctcaaggggaaattattgacttacctattaaaactaatttccgtgaaggtttgaccgtc
actgagtacattatttcttcctatggtgcgagaaaaggtctggtagatacagcgttgcgt
accgctgactctggttatcttactcgtcgtttggtggatgtatctcaggatgtaattatc
cgtgaaaccgattgtggtactcataaaggggtctggattgaacccatgaaagatggcgat
cgcactttaatccccttaggagatcgtctcttgggtcgggtattagccgatgatgtggta
catccgatcacaggggaagttattgccctacgcaaccagtccatcgatcaagatttagct
aaaattatcggtaacaccgtggagaaagtaaaagtaagatctcctctcacctgcgaaact
gcccgttctgtatgtcaaaaatgttacggttggtccttggctcacggagaatgggtaaat
atgggagaagccatcggtattatcgccgctcagtccatcggggaaccaggtacccagctt
accatgcgtactttccacactgggggggtgttcactggggaagtagcccaacgtattatc
agtcccgtggcaggaaaagtcaaatttgataaaaaattaaaagttagggaaaatcgtacc
cgtcacggtgaccaaaaattattggtagaagttaatggtaacttaattattggagatcag
aaaattttagtacctgtgaacagtttactggcggtgcgcgaaggagatgaagttatccaa
gaacaactcctagccgaagtaatgccccagaaaactcgctccaccgagagagtgaccaaa
gacgtagcctctgaccttgcaggggaggtgattttccaagaagtagatccccttaccacc
accgacagacagggcaacaacaccatcacagcgtcccgtaacggcttgatttgggtactc
tctggggaagtttataatcttcctcctaatgctgaacccgtggttaaaaacggtgaaaaa
atcaagaaaaattccgtattagccgaaagtaagctaaaaaccaagagtggtggggtatgc
cgtttagaagaaggtagtcgggaaattgaaattattaccgcttctgtgtccctcgatcaa
gcggatatattcctcgaacaccatggcaatcaacaacagtatgtaattcatacccctagg
ggcgatcgcttctccctcaaagtcagcccgggcaccaaagttcaaaataaccaaatcgta
gccgaattaattgacgataccttcaccaccgaaacaggtggtatcatgcgttatgcagga
ctagaaactggtcgtgggaacaaaaaacaggggtatgaggtaaccaccgaaggaactctt
atttggattcctgaagaaagccacgaaattaacaaagacatctccttgttgatggtggaa
gatggacagtatgtagaagcaggtacagaagttgtaaaagacgtattctgtcaatctagt
ggtattgtcgaagtaattcaaaagaacgacattttaagggaaattatcatcaaaccaggt
aagctatacatggacttagatcctgaacatatggcaaccctagaagatggcaccattctt
gcccctggtaccgaaatcatggctggaatcaccaccgaagatgaatgtatcagtgaattt
gttgatactaacgaaggggtgggtttattactacgtcccatgaaacagtatgaagtaatt
aataccacccaatctccttcccaagaatccctaaacagtgcagggggaaaaattaacctt
cgtcccgtattacgtaccttcttcaaagatggtgaaagggtgaaaagtgtggaaggagta
cagttagttaccacccaattagttctcgaaaccaccgagggcatgagcgccgacatcgaa
ttaatcgaagatgaaaataatgacgattgtttccgcttacaaatcgtggttcttgagtct
gtcatgctacgccgtgagctagaaacagaaccgaatatcgtcaccaccgtaaccgtcagc
gatggacaagaaattatgccgggggatgtagttgccactacccagattctctgtcaagaa
aatggtatcattcgtggtatccgtgaaggggttgaggctattcgccgtatccttgtggtc
agagaaaatgacatcatcgaaattgaaaccgaaggtgtattactcaaacaagaaggagac
tttgtcacccaaggagagctgatcgctgagggagtcaaagcccctgattctggctatgtc
atggaaactgaaggtaatacaatcagtttacgccatgcccgtccataccgtgtttctacg
ggagcaattttacacattgaacagggtgacttagttcaaaggggtgataaccttgtacta
ttggtatttgaaagggcaaaaactggggacattgtccaaggtttaccgagaattgaagaa
ttactagaagcccgtaaacccaaagaaccagctattcttgcccgtcgtcctggggtgtgt
caagtagaatataaggatgacgaggcgatcgatgttaaagtcattgaagatgatggcact
atttctgagtattccttagggcctaaccaaaatattatcgtaggtgatgatcaaagggtt
aatacaggagattccttgtccgatggtttagttagcccccacgaactgttagaagtcttt
tatgactactacaaggagcatatgggagcctatgatgcggccctcggtgccatgcaaaag
gctcagttattcttggttaaccagattcaaggggtttatcaatctcagggcattgatatt
tctgataaacatatcgaggtgattgtacgtcagatgacttctaaggttcacattgatgat
ggtggcgatagtattcgtttacctggtgagttggtagagttgcgcgacattgaaaaagat
aatgaaactttatctcttactggtggcgctcctattgaatatactcctaagttgatgggt
attactaagtctagtttgaatactgatagtttcatctcggcggctagtttccaagaaacc
acaagggtattaacggaggcggctatcgaaggtaagtctgactggttaagaggtttgaaa
gaaaacgtcattattggacgtttgattcctgctggtacagggtttaatgcctatgatgaa
aatatggactgggaagatactgaggtaggtgcgggtaattctaattaccttggcattgat
gatgttagtgcggagtatgaggaacaaaattatattattcctgattctgaagatgtcatc
attgatgataaaactgccagggtcttgtctccagaagatgccattatggatgatgatttg
attgatgataattatcaaagttag
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