Cyanobacterium sp. HL-69: AA637_04240
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Entry
AA637_04240 CDS
T05309
Symbol
rnr
Name
(GenBank) ribonuclease R rnr
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cyl
Cyanobacterium sp. HL-69
Pathway
cyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA637_04240 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyl03019
]
AA637_04240 (rnr)
03016 Transfer RNA biogenesis [BR:
cyl03016
]
AA637_04240 (rnr)
Enzymes [BR:
cyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AA637_04240 (rnr)
Messenger RNA biogenesis [BR:
cyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AA637_04240 (rnr)
Transfer RNA biogenesis [BR:
cyl03016
]
Prokaryotic type
tRNA degradation factors
AA637_04240 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_cyt-4
OB_HELZ2
Big_14
Dabb
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AUC60423
LinkDB
All DBs
Position
complement(920504..922750)
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AA seq
748 aa
AA seq
DB search
MEFSIATILSHLSQDKLVAGKVLEKKLGCEEPEELEKLQIALDVLEKVGVVTKEFGKYRR
VSEADVVEAKLRCSSKGFCFAIQDEEDADDIYIRESHLSNAWNSDRVLVKIIKEGTRRRS
PEGEVKLITERANPSVLARVVEDNSEYHAVPLDDRLLFEVKLKDEPESISEAINHLVHVN
VLRYPIGQNPPMGKVMRVLGSDAEEAADTDIVSSKHDLPHEFSEKIFRKADEISPDFGEE
ELAKRMDLRDKLTITLEQDNVGELDLLVENAFTLEQNEDGNWCLGVHMADVTHFVQPDTH
IDREARKRATTVHLGDKIIPMLPPKVEKCCSLVPNEDRLTVSIFITFDDKGQVVEYNIHP
SVIRVDHSLTYKEVQSIIGLGSAKAELKDVFPLLNEMFFTLSPLVKAQRLQRGGFDIALD
DITSYFKDEGRIGAIASYSQLPVLSLMTELMVLVGKLVAEHLHELGLPAIYCTQAKPDWD
ELEDLLKLVANLKLDFKLESEEDLFPLDYYHLTQEFSKSDYEKVLNYLLLCSLKADKYIQ
HPAPHFGLAYPIYTHCVSPGQRYIDLHIQRVLKALFENGRDRRHSNAKKGVDLNSNSCHG
DINWNVLPPAIQSNLEADLHSLVTHLNEREKIAHDAEKDLAGLKKAEKMKDCTGKVFSGL
ITGVQSYGFFVQIEDSLVEGLVHVSSLKDDWYEYRARHTCLVGRKNRTAYRLGDRVEVEI
KSVDYYRQQIDLVTVRGGSDAVDADFEE
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacaattctttctcacctaagtcaagataagctggtggcaggg
aaagtattagaaaaaaaactaggttgtgaagagcctgaagaactagaaaaactacaaatt
gccctcgatgtcctagaaaaagttggcgtagtaaccaaggagtttggcaagtatcgccga
gtgtcggaagcggatgtggtagaagcgaagctacgttgttcgagtaaaggtttttgcttt
gctatccaagatgaagaggatgccgatgatatttatattagagaaagtcacctcagtaat
gcgtggaatagcgatcgcgtcttagtcaagattatcaaagaaggtaccagaagaagatcc
cctgaaggggaagtaaaattaatcactgaaagagccaatccttcagtattagcaagggtt
gtggaagataactcagaatatcatgccgtgccgttagacgatcgcctcttattcgaggta
aaactaaaagatgaacccgaatccatctctgaagccatcaatcaccttgtccatgtgaat
gttttaaggtaccccatcggacaaaacccccccatgggtaaagtaatgcgggtattgggt
agtgatgcagaagaagcagcggacaccgatattgtttcctctaaacatgatttaccccac
gaattttccgagaaaatttttagaaaagccgatgaaatttccccagattttggcgaagaa
gaattggcaaaacgcatggatttacgggataaattaaccatcaccctagagcaagataac
gtcggggagttggatttgttggtggaaaatgccttcaccctagaacagaatgaagatgga
aactggtgtttaggggtgcatatggcggatgtgactcacttcgtacagccagatacccac
attgatagggaagcccgtaaaagagccaccaccgtacatttaggagataaaattattccg
atgttgccccccaaggtggaaaaatgttgttctttagtacctaatgaagatcgtttaacg
gtgtctatatttatcacctttgacgataaaggtcaggtggtagagtacaatattcatcct
agtgtgattcgggttgaccatagcttgacctataaagaggtacagagtatcatcggtttg
ggtagtgccaaggcagaattgaaggatgtttttccccttctcaatgagatgtttttcacc
cttagccccctagtgaaggcgcaacgtttacaaaggggtggttttgatattgccctagat
gatattacctcctattttaaagatgagggtagaatcggtgcgatcgcatcttattcccaa
ctacctgtattatcattaatgacagagttaatggtgttagtaggaaaattagttgccgaa
catctccacgaattaggcttaccggccatctactgcacccaagccaagcccgattgggat
gaattggaagacttactaaaattagtggccaacctcaaactagacttcaaactagaatcc
gaagaagacttatttcccctcgactactaccaccttacccaagagtttagtaaatccgac
tacgaaaaagtcctcaactacctcctcctttgctccctcaaagccgataaatatatccaa
cacccagccccccatttcggcttagcctaccccatctacacccactgtgtatcccccgga
caacgctatatcgacttacacattcaacgagtattaaaagcattatttgaaaatgggcgc
gacagaagacacagcaacgccaaaaaaggagtagatctcaatagtaactcctgccatgga
gatattaactggaatgtcttacccccagccatccaaagtaacctcgaagcagatttacac
tcccttgttacccaccttaacgagcgtgaaaaaatcgcccatgatgccgaaaaagacttg
gcagggctaaagaaagccgaaaaaatgaaggactgcacaggtaaagtattcagtggctta
attacgggcgtacaatcctatggcttctttgtacaaatcgaagattccctcgtagaagga
ttagtccatgttagctccctcaaggatgattggtacgaatatcgcgcccgtcacacctgt
ctcgtgggcagaaaaaaccgcactgcttaccgtctgggcgatcgagtagaagtggaaatc
aagagcgttgactactatcgccaacaaattgacctcgtcaccgtccgcggtggtagtgat
gctgtagatgcggactttgaggagtaa
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