Cyanothece sp. PCC 7425: Cyan7425_4475
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Entry
Cyan7425_4475 CDS
T00836
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyn
Cyanothece sp. PCC 7425
Pathway
cyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan7425_4475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyn03019
]
Cyan7425_4475
03009 Ribosome biogenesis [BR:
cyn03009
]
Cyan7425_4475
Enzymes [BR:
cyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cyan7425_4475
Messenger RNA biogenesis [BR:
cyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyan7425_4475
Ribosome biogenesis [BR:
cyn03009
]
Prokaryotic type
rRNA helicases
Cyan7425_4475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
ACL46785
UniProt:
B8HK35
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All DBs
Position
4546323..4547696
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AA seq
457 aa
AA seq
DB search
MTLSFSQLGLSPARVQRLEALGFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALP
ILERIDTQSPAVQALILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLHK
GAQVLVGTPGRVLDLLNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQMA
FFSATMAPPVYRLATQFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSKSTTLQLVLEME
DPESAIIFVRTRKVAAELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVVATD
IAARGLHVDDLTHVINYDLPDSVESYVHRIGRTGRAGKTGIAVSLFQPLERHKLGQIERH
IRQKLTVQDAPNRTQIAARRLERMKDQVRSALMGERMASFLPIVSQLSEEYDVQAIAAAA
LQLAFDQNRPLPEVPEPALPVEPVLKQQRFNQKPVSR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttccttcagccaacttggtctatcccccgcccgcgtccaacgcctggaagct
ctaggctttaatgaacccacacccattcaaatacaggctattcctcccttactagcgggc
cgggatgtgatcggtcaggcccaaaccggaacagggaaaaccgccgcttttgccctgcct
atattggagcggattgatacccagtctcctgctgtacaggctttgattcttaccccgaca
cgtgaactggcagttcaggtcagtcaatccatctataacttcaaagccgaccctaaaatc
cgtgttctggctatctacggggggcaggcgatcgaacggcagattgaacgcttacacaag
ggagcccaagttttggttggaactccagggcgggttctggatttgctgaaccggggggtg
ctgaatctgaatgccctcgcctggcttgtgctggatgaagctgatgaaatgttggatatg
ggctttatgccggatgtgaagcaaatcctcagccaggctccagctcaacggcagatggcc
ttcttctccgccactatggccccacccgtctaccgcttagccacccaattcctgcgatcg
ccagaaacgattacggtcgaacatcccaaagctgcccccagccggattgaacaagtcgcc
tataaagtgcctcggggatggtccaagtccactacgctgcaactggtgctggaaatggaa
gacccagaatcggcgattatctttgtccggacccgtaaagtggctgccgagctgaccagt
caactgcaatcccatggctacagcgttgatgagtaccatggcgacctgagtcagagccag
cgagaacgtctattgcagaggtttcgccagggacagattcgttgggtcgttgccacagat
attgctgcccgaggtctacatgtggatgacctcacccatgtgatcaattacgatctgccc
gatagtgtggaaagttatgttcaccggattggtcgcaccggtcgggctggtaaaactggc
atagcagtctccctctttcaacctctagagcggcataaattgggacagatcgagcggcat
atccggcagaaacttacggttcaggatgctcccaaccgcactcagattgctgcccgtcgc
ctggaacggatgaaagaccaggtgcgctcagctttgatgggagaacggatggcctccttt
ctaccgatcgtctctcaattgagcgaagaatacgatgttcaggcgatcgctgcggcagcg
ctgcaattggcctttgatcaaaatcgtcctcttccagaagtacccgagcctgccctcccc
gtagagcctgtgctcaaacagcaacggtttaatcaaaaacctgtgtctcgttaa
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