Citrobacter youngae: CD187_03500
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Entry
CD187_03500 CDS
T05526
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cyo
Citrobacter youngae
Pathway
cyo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CD187_03500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyo03021
]
CD187_03500
Transcription machinery [BR:
cyo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CD187_03500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
AWV25364
LinkDB
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Position
complement(696136..697983)
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEDGDDDSSDDDNSIDPELAREKFGELRTQYEITRDTIKAK
GRSHAAAQEEIQKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccaaatgatcaatgacatgggtattcaggtgatggaagaagcacct
gatgccgatgatctgctgcttgctgaaacctccaacagcaccgatgaagacgcggaagaa
gcggctgcccaggttctgtccagcgttgagtccgaaatcggtcgtacgactgacccggtc
cgcatgtacatgcgtgaaatgggtaccgttgaactgttaacccgcgaaggcgaaatcgac
atcgctaaacgcatcgaagacgggattaaccaggttcaatgctccgttgccgaatacccg
gaagctatcacctacctgcttgagcagtacgatcgcgtagaagctgaagaagcacgtctt
tccgatctgatcactggctttgtcgatccaaatgcggaagaagacatggcgccaacggcg
acccacgtcggttctgaactctctcaggaagagatggatgacgatgaagacgaagatgaa
gaagatggcgacgacgacagcagcgatgatgacaacagcatcgaccctgagttagcgcgt
gaaaaattcggtgaactgcgtactcagtacgaaatcactcgcgacaccatcaaagcgaaa
ggccgcagccatgctgccgcgcaggaagaaattcagaagctgtccgaagtgttcaaacag
ttccgcctggtgccgaagcagttcgactacctggtaaacagcatgcgcgtcatgatggac
cgcgtgcgtactcaggaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccg
aagaaaaacttcatcaccctgttcactggcaacgaaaccagtgaaacctggttcaacgcg
gcaatcgcgatgaacaaaccgtggtctgaaaaactgcacgacgtggcagatgacgttcac
cgcggcctgcagaaactgcagcagattgaagaagaaaccggcctgaccatcgagcaggtt
aaagatatcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaaaaaagag
atggttgaagcgaacttacgtctggttatctctatcgctaaaaaatacaccaaccgtggc
ttgcagttcctggatctgattcaggaaggtaacatcggtctgatgaaagcggttgataag
tttgaataccgtcgtggttacaagttctccacctatgcaacctggtggatccgtcaggcg
atcacccgttcgatcgcggatcaggcgcgtaccatccgtatcccggtacatatgattgag
actatcaacaaactcaaccgtatctcccgtcagatgctgcaagagatgggccgcgagccg
acgccagaagaactggctgagcgcatgctgatgccggaagacaagatccgtaaagtgctg
aaaatcgctaaagaacctatctccatggaaacgccgatcggcgacgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgcgaccaccgag
agcctgcgtgccgcaacgcacgacgttctggctggcctgaccgcccgtgaagcgaaagtt
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgtcacccgagccgctctgaagtgctgcgtagcttcctcgacgattaa
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