Citrobacter youngae: CD187_04755
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Entry
CD187_04755 CDS
T05526
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cyo
Citrobacter youngae
Pathway
cyo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CD187_04755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyo03400
]
CD187_04755
Enzymes [BR:
cyo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CD187_04755
DNA repair and recombination proteins [BR:
cyo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CD187_04755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AWV25583
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All DBs
Position
941481..945026
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AA seq
1181 aa
AA seq
DB search
MNDAAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRETTDNPLYARLLDEIADKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRDIA
QVVFETWKGPQALLRDIDRYLQGEAPVIKAPPSDDETLASRHEQIFARINQIKQQWCDSV
DELDGLMEASGIDRRKFNRGNQGKWIEKISAWAQEETQSYQLPDALEKFSQRFLEERTKA
GGITPQHPLFVAIDELLSEPLTLRDLVITRALAEIRSAVAEEKRRRGELGFDDMLSRLDA
ALRSESGDALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNTLFSQMDDAFMFREIPFSPVKS
AEKNQALRFVLHGETQPAMSMWLMEGESCGVGDYQSYMAQVCATQIRDWLKAGHSGAAQL
VSGKASSPVRASDISVLVRSRQEAALVRDALTQLAIPSVYLSNRDSVFETLEAQELLWVL
QAVMTPERENTLRSALATSMMGLNAQDIEALNTDENAWDAVVEEFDGYRQIWHKRGVMPM
LRALMTARQIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLSQHILEPDS
NASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRSSFEAVLDL
SDAEESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPMDAVGLRSAIEALCSNDIACQTPAQPDGEPWQVAQAVSSELSAKILQRKPGDS
WRVTSYSGLQQRGQGIAQDLIPRLDIDATGVGEVIEESGLTPHQFPRGASPGTFLHSLFE
DLDFTQPVDPHWVEEQLALGGYDAHWTPVLTEWLDAILQAPLNETGVSLSQLSAREKQVE
MEFYLPISQPLMANQLDALIRQYDPLSAGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLD
YKSNWLGEDSSAYTQQAMASAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDSENPQQGIYATRPDGELIALMDEMFAGAVQETML
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgccgctgagtcccttgatccactgcgcttgcctctgacgggcgagcgcctg
attgaagcctctgcgggcaccggtaaaacctttaccatcgccgccctatatttacgttta
ctgcttggactgggcggctctgccgcctttcctcgtcctctgaccgtcgaagaactgctg
gtggtcaccttcaccgaggcggctaccgaagagctgcgcggtcgaattcgtagcaatatt
catgaactgcgaattgcctgcctgcgtgaaaccaccgacaacccgctatatgcccgtttg
ttagatgaaattgccgataaaaaacaggccgcgcagtggctgctattggctgaaagacag
atggatgaagcggcggtgtttaccatccacggcttttgtcagcgtatgctcagtcttaat
gcctttgagtcaggcatgctgttcgaacagcagctgatagaagatgaatcgctgctgcgc
tatcaggcctgcgcggacttctggcgtcggcactgctacccgctgccccgcgacattgcg
caggtggtttttgaaacgtggaaaggaccgcaagcgctgctgagagatatcgatcgctat
ctgcagggggaagcgccggttatcaaggcgccaccgtctgatgacgaaacgctggcctcc
cggcatgaacaaattttcgcacgcattaaccagatcaagcagcaatggtgtgattctgtt
gatgagctggatggcctgatggaagcctccggaattgaccggcgtaaatttaatcgcggt
aatcagggcaagtggatcgaaaagatcagcgcgtgggcgcaggaagaaacacaaagttac
cagcttcctgacgcgttggagaaattctcacagcgttttctggaagagcgcaccaaagcg
ggcgggataacccctcagcacccgctgtttgtcgctattgatgaactgcttagcgaaccg
ttaactctccgtgatctggtgatcacccgggcgctggcggagatccgctcggcagttgcc
gaggaaaaacgtcgccgcggcgagctgggttttgacgatatgctcagccgtctggatgcg
gcgttgcgcagtgaaagcggagatgcgctggcgacggctattcgtactcgttttccggtc
gccatgatcgatgaattccaggataccgatccgcagcagtaccgtatttttcgtcggatc
tggcagcatcagccggataccgcactgctgctaattggtgatccgaaacaggcaatttac
gcgtttcgcggcgcggatatcttcacctatatgaaggcgcgcagcgaagtcagcgcacac
tatacgcttgataccaactggcgttcggcccccggcatggtcaatagcgtgaatacgctt
ttcagccagatggacgacgcctttatgttccgcgaaatccctttcagcccggtaaaatcc
gcagaaaaaaaccaggcgttacggtttgttttacacggcgaaacgcagccagctatgagt
atgtggctgatggaaggagaaagttgcggcgtaggcgattatcagagctacatggcccag
gtgtgcgccacacaaattcgcgactggcttaaggctgggcattctggcgctgcgcaactg
gtcagtggcaaagcatccagcccggtacgcgcgtcagatatcagcgtactagtgagaagc
cgccaggaggcagcgctggtccgtgatgcgctgacgcaactggccattccctctgtctac
ctctccaaccgtgacagcgtattcgaaacgctggaagcgcaggagttgctatgggtgctg
caggcggtgatgacgccggaacgtgagaacacgttgcgtagcgcgctggcgacctcaatg
atggggttgaatgcgcaggatattgaagcgttaaataccgacgagaatgcctgggatgcg
gtggttgaagaattcgacggctatcgtcagatctggcataaacgcggcgtgatgccgatg
ctacgtgcgctgatgacggctcgccagattgcagagaacctgctggcgacggcgggaggc
gaacgtcgactgaccgacattttacatatcagcgaactgttgcaggaagcgggctcgcag
ttggaaagcgagcatgcgctggtgcgctggttgtcccagcatattcttgaacccgacagc
aacgcgtccagccagcagctcaggctggaaagcgacaagcatctggtcaaaatcgtcacc
atccataaatcgaaagggctggagtatccgctggtctggctgccgtttatcaccaatttc
cgcgttcaggatcaggctttctaccacgatcgtagctcgtttgaagccgtgctggatctc
agcgatgctgaggagagcgttgagctagccgaagcagaacgtctggcggaagacctgcgt
ttgctgtatgtcgcgctaacccgttcggtatggcattgcagccttggcgttgcgccgttg
gtacgacgtcggggcgataaaaaaggggataccgatgtgcatcagagcgcccttggtcgc
ctgttgcaaaaaggtgagccgatggatgccgtgggtctgcgtagcgcgattgaagcgctt
tgtagcaacgatattgcttgccagactcccgcgcagcctgacggtgaaccctggcaggtt
gcgcaggctgttagcagcgaactgagtgcgaaaatactgcagcgtaagcccggcgatagc
tggcgcgtgaccagttattccggtctgcaacagcgtggacagggtatcgcgcaggatctg
atcccacgactggatatcgatgccacaggcgtcggtgaggttattgaagagtcagggctt
acaccgcatcagtttccgcgcggcgcttcgccgggtacattcttgcatagcctgtttgaa
gacctcgattttacgcaaccggtggatccgcattgggtcgaggagcaactggcgttgggc
ggttatgacgcacactggacgccggttttgaccgaatggctggacgccattttgcaggcg
cctctcaacgagacgggcgtgagtttgagccagctatccgcgcgtgaaaaacaggtggag
atggagttttatctgccgatttcgcagccgttgatggccaaccagcttgatgcgttaatt
cgccaatacgatccgctctcggcggggtgccctgcgttggactttatgcaggttcgcggc
atgctgaaaggttttattgacctggtattccgccaccaggggcgttattacctgctcgat
tacaaatcgaactggctgggcgaagacagctccgcctatacgcagcaggcgatggcctct
gccatgcaggcgcatcgctacgaccttcaataccaactttataccctcgcgctgcatcgc
tacttacgccatcgcattgctgattacgattatgaacgccattttggcggcgttatctat
ctcttcctgcgcggcgttgacagtgaaaatccgcagcagggaatttacgcgacccgacct
gacggagagttgattgcgttgatggacgagatgtttgccggtgcagtgcaggagacgatg
ttatga
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