Citrobacter youngae: CD187_10920
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Entry
CD187_10920 CDS
T05526
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cyo
Citrobacter youngae
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyo03032
]
CD187_10920 (topA)
03400 DNA repair and recombination proteins [BR:
cyo03400
]
CD187_10920 (topA)
Enzymes [BR:
cyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CD187_10920 (topA)
DNA replication proteins [BR:
cyo03032
]
Prokaryotic type
DNA Topoisomerases
CD187_10920 (topA)
DNA repair and recombination proteins [BR:
cyo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CD187_10920 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
AWV26707
LinkDB
All DBs
Position
2233341..2235938
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPGGDALPLEVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVTMVRDYISDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVLAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDTLTLIELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFTDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgtatgggtgttgacccgtggcacaactgggat
gcgcgctatgaagtgctgcctggtaaagagaaagttgtttctgaactgaagcaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtcatcggtggcgacgacacccgctacagccgcgtggtgtttaac
gaaattaccaaaaatgctattcgccaggcgtttgaaaaaccgggcgagttgaacatcgat
cgtgttaatgcgcaacaggcgcgccgctttatggaccgtgttgtgggctatatggtgtcg
ccactgctgtggaaaaaaattgcgcgtggtctgtctgccggtcgcgtacagtctgtggct
gtgcgtctggtggttgagcgtgaacgcgaaatcaaagcatttgttccagaagagttctgg
gaaattgatgctaatacgaccacgccgggcggcgacgcgttgccgcttgaggtgacgcat
caaaatgataaaccgttccgtcctgtaaatcgggaacaaacgcttgccgctgttagcctg
ttggaaaaagcgcgctatagcgtcctggaacgtgaagataaaccgaccagcagcaagccg
agcgcaccgttcattacctccacgctacagcaggctgcgagcacgcgtctgggctttggt
gtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcgggttacatcacttacatg
cgtactgactcaaccaacctgagccaggatgctgtcaccatggttcgcgattacatcagt
gataattttggcaaaaaatatttgccggagagcgcgaaccagtacgccagcaaagagaac
tcgcaggaagcacacgaagctatccgtccttccgatgtcgccgtactggcggagtcgctg
aaagatatggaagccgatgcgcaaaaactgtatcagctgatctggcgccagtttgtagct
tgtcagatgacgccagcgaaatatgactctaccaccctgaccgtgggtgcgggtgatttc
cgtctgaaagcgcgtggtcgtattctgcgcttcgatggttggaccaaagtgatgccagcg
ctgcgtaagggcgatgaagatcgcatcttaccggcggtggacaaaggcgataccttgacg
cttatcgagctgacacctgcgcagcacttcaccaagccgcctgcacgcttcagtgaagct
tcgctggttaaagagcttgaaaagcgtggcattggtcgtccatccacctatgcgtcgatc
atttctacgattcaggatcgcggttatgttcgcgttgaaaaccgtcgcttctacgctgaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgagctgatgaactac
gattttaccgcgcagatggaagacagcctcgaccaggtggcgaatcacgaagccgaatgg
aagggcgtactcgacaacttcttcactgattttactcagcagttagataaagccgagaaa
gatcctgaagaaggcggtatgcgtccgaaccagatggtgctgaccagcattgattgcccg
acctgcggacgcaagatgggtattcgtaccgccagtaccggcgttttccttggttgctcc
ggctacgcactttccccgaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtattgaacgtgctggaaggcgatgacgcggaaacgaacgcattgcgcgccaaacgc
cgctgccagaagtgcggtacggcaatggatagttatctcatcgatcctaagcgtaaattg
catgtgtgtggtaataacccaacctgcgacggctacgagatcgaagagggtgaattccgt
atcaagggttatgacggtcctatcgtagagtgcgaaaaatgtggttctgaaatgcacctg
aaaatgggacgtttcggcaagtacatggcgtgtactaacgacgagtgtaaaaacacccgt
aagatcctgcgtaacggtgaagttgctccgccgaaagaagatccggttccgctgccggaa
ctgccgtgtgaaaaatctgacgcgtatttcgtgttacgtgatggtgctgcaggtatcttc
ctggcagccaatacgttcccgaaatcacgtgagactcgtgcgccgttggtggaagagttg
taccgcttccgcgatcgcctgccggaaaaactgcgttatctggcagatgcgccgcaaaca
gacccggatggtaacaagtctatggttcgtttcagccgtaaaaccaagcagcaatacgtt
gccgctgagaaagacggtaaggcgactggctggtccgcgttcttcgttgacggtaaatgg
gtagaagggaagaaataa
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