Citrobacter youngae: CD187_14510
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Entry
CD187_14510 CDS
T05526
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cyo
Citrobacter youngae
Pathway
cyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD187_14510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyo03019
]
CD187_14510
03009 Ribosome biogenesis [BR:
cyo03009
]
CD187_14510
Enzymes [BR:
cyo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CD187_14510
Messenger RNA biogenesis [BR:
cyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD187_14510
Ribosome biogenesis [BR:
cyo03009
]
Prokaryotic type
rRNA processing factors
CD187_14510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AWV27360
LinkDB
All DBs
Position
2944625..2947888
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPTEEEYVERKQPEQPALATFAMPDVPPA
PALQEPAAKAAAPKAAAATAAVAAQPGLISRFFGALKSIFGGSEEVKPVEQPAPKAEEKT
ERQQDRRKPRQNNRRDRNDRRDNRDNRGDRDNRSERSENGENREDNRRNRRQSQQQNAEA
RDNRQQTTDVVDKAKSGDEQQAPRRERNRRRNDDKRQAQQEVKELNQAEQPVQDTEQEER
VRQPQTRRKQRQLTQKVRFTDSPAVEAEVATVAAIAETAVAQPTEQPVPAQRTELAKVDL
PAVVATEQEDNSEARDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTVACAS
PELASGKVWIRYPVARPQDQQVEEQREQEMVQQQAAPVAVEPQVAAAAVEHIVDTPAPVE
AVQPEVVVAEPQAAVVETTQVETTHPEVIETPVEEQPQIIAASDAPVAEEITAEAEPVAD
VVTAPVAEEPAEVVIPQPEVVEEITEVVETAPVVEEVAAPKDVVAAPVVETEVVKAEVVA
ASADAEHLHSHATAPMTRAPAPEYVPEAPRHSDWQRPAFAFEGKGAAGGHSATHQATAPA
TRPQPVE
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgtcgcccttgtagat
gggcaacgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagccaac
atctataaaggcaaaattacccgtattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatacttccccgct
aactacaactcccatggtcgtcccaacattaaagacgtgttgcgcgaaggtcaggaagtc
atcgttcagatcgataaagaagaacgcggcaataaaggcgctgcgctgactacctttatc
agcctggcgggtagttatctggttctgatgccgaacaacccgcgcgcgggcggtatctcc
cgtcgtattgaaggcgacgaccgtaccgaattaaaagaagcgctggcaagcctggaactg
cctgatggcatgggccttatcgtgcgtaccgcaggggtcggcaaatccgccgaagcgctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcaaaaagccgctgacagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgttcgcgctttccgtgac
tacttacgtcaggacatcggcgaaatccttatcgataacccgaaagtgatggagatggcg
cgtcagcacatcgccgcattgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggcgaaatcccgctgttcagccactatcagatcgagtctcagattgagtccgcattccag
cgcgaagtacgtctgccgtccggcggctcaatcgttattgacagcacagaggcactgacc
gctatcgatatcaactccgcacgcgcaactcgcggcggcgacatcgaagaaacagcgttc
aacactaaccttgaagcagccgatgaaattgcccgtcagctgcgtcttcgcgacctcggc
ggtctgattgtaatcgacttcattgatatgacgccggttcgccaccagcgcgcggttgaa
aaccgtctgcgcgaggccgtacgccaggacagagcgcgtattcagatcagccatatttct
cgcttcggtctgctggagatgtctcgtcagcgtctgagcccgtctctgggtgaatccagc
catcacgtgtgcccgcgctgctccggcaccggtaccgtacgtgataacgaatcactgtcg
ctgtctattctgcgtctgatcgaagaagaagcactgaaagaaaatacgcaagaagttcac
gctattgttcctgtgccaatcgcctcttacctgcttaacgaaaaacgtaccgcggttaat
gctatcgaaacgcgtcagaatggcgtgcgctgtgtgatcgtgccaaacgatcagatggaa
accccgcactattctgtgctgcgcgtacgcaaaggggaagaaacaccgaccctgagctac
ctgctgccgaaactgcatgaagaggcaatggcattgccgacggaagaagagtacgtcgag
cgtaaacagcctgagcaaccggcgctggccaccttcgccatgcctgacgttccgccagcc
cctgctctgcaggaacctgccgcgaaagccgccgcgcctaaagctgcagcagcaaccgca
gccgttgccgcacagcccggtttgattagccgtttctttggcgcactgaagtccatcttc
ggtggtagcgaagaagtgaaaccggttgaacaacctgcgccgaaagctgaagagaaaacc
gaacgccagcaggatcgtcgtaaaccgcgtcagaacaatcgtcgcgaccgtaacgatcgt
cgtgataaccgtgataatcgcggtgaccgtgacaaccgtagcgaacgttcagaaaacggc
gaaaaccgtgaagataaccgccgtaaccgtcgtcagtcccagcagcaaaatgcggaagct
cgcgataaccgccagcaaaccactgatgttgtagacaaagcgaaatccggtgatgaacag
caggcgccgcgtcgcgaacgtaaccgccgtcgtaacgatgacaagcgtcaggctcagcag
gaagttaaagagctgaaccaggctgaacaacctgtgcaggataccgagcaggaagagcgc
gtacgtcagcctcaaacccgccgcaaacagcgtcagttgactcagaaagttcgtttcaca
gacagtccggcggttgaagccgaagtggctactgttgctgcaatcgctgaaactgctgtt
gctcaaccaacagagcagccggtaccggcacagcgcaccgaactggcgaaagttgatctg
ccagccgtcgttgcgactgagcaggaagacaacagcgaagctcgtgactccaacggtatg
ccgcgtcgttctcgccgctctcctcgccatctgcgcgtcagtggacagcgtcgtcgtcgt
taccgtgacgagcgttatccggttcagtcgccaatgccgttaacggtcgcctgcgcatct
cctgaattagcgtccggtaaggtttggatccgctaccctgttgcacgtcctcaggatcag
caggttgaagaacagcgcgaacaggaaatggtccagcagcaagctgcacctgtcgccgta
gagcctcaggttgctgccgctgccgttgaacacattgtggatacccctgcgccggttgaa
gccgtgcaaccagaggttgtcgtagctgagcctcaggccgccgttgttgaaaccacacag
gttgaaaccactcatccggaagtgattgagaccccggtcgaggaacaaccgcaaattatc
gctgcatctgatgcgcccgtagcagaagaaatcaccgctgaagccgaacctgtggctgac
gttgtgactgcaccggttgccgaagagcctgcagaggttgttattccccagccagaagtg
gttgaagagattactgaggttgtggaaacagcgccagttgttgaagaagttgcagcgccg
aaagacgttgttgccgcgcctgtcgtcgaaactgaagtcgttaaggctgaagttgtcgca
gccagcgctgatgctgaacacctgcacagccatgcaaccgcgccaatgacccgcgctccg
gcaccggaatatgtgccagaagcgccgcgtcatagcgactggcagcgtccggcattcgcc
tttgaaggcaaaggtgccgcaggtggacacagcgcaacgcatcaagcgactgcgccagca
acacgtccacagcctgttgagtaa
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