Citrobacter youngae: CD187_19760
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Entry
CD187_19760 CDS
T05526
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cyo
Citrobacter youngae
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyo03019
]
CD187_19760
Enzymes [BR:
cyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CD187_19760
Messenger RNA biogenesis [BR:
cyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CD187_19760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
AAA_22
AAA_19
Cas3-like_C_2
HA2_N
DUF2732
Motif
Other DBs
NCBI-ProteinID:
AWV28310
LinkDB
All DBs
Position
complement(4020255..4022684)
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AA seq
809 aa
AA seq
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MTSLPVAAVVPELLTALDASPQVLLTAPTGAGKSTWLPLRLLEHCGITGRIILLEPRRLA
ARNVAQRLAELLNEKPGETVGYRMRAQSCVGPQTRLEVVTEGVLTRMIQRDPELTGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNGRLQQMLPDAPTIVSEGRA
FPVERRYLPLAAHLRFDEAVAIATAELLRHESGSLLLFLPGVGEILRVQEQLATRVGSDV
VLCPLYGALTLSEQRQAIVPAPQGKRKVVLATNIAETSLTIEGIRLVVDCAQERVARYDV
RTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAAAQGEAEILQSDLSGL
LMELLQWGCTEPEQLNWLDTPPAINLQAAKRLLQMLGALEGDRLSARGQKMAALGNDPRL
AAMLVGAKNNTEAATAAKLAAILEEPPRGGSTDLTVAFARNQPAWQQRSQQLLKRLNVSS
GQPDSTLLPSLLARAFADRIARRRGQEGRYQLANGMGAMLDADDASGRHEWLIAPLLLQG
SASPDARILLALPLDIESLMQACPELLQQSDTIEWDETQGTLKALRRSRIGQLTVKVQPL
AKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLQCAANWLPEYDWPAVDEDSLLAS
LETWLLPHMGGVHSLRALKALNVGQALRGLLDWSMLQRLDSELPAHYTVPTGSRIAIRYH
EDNPPVLAVRMQEMFGEAKTPAIAQGRVPLVLELLSPAQRPLQVTSDLSAFWQGSYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtcgttgcccgttgccgccgtagtgcctgaactgcttaccgcccttgatgcctcg
ccgcaggttctgctgacggcgccgaccggtgcagggaaatcgacctggctgccgttgcga
cttcttgagcattgcggtatcacggggcggattattttgctggagccgcgccgcctggca
gcgcgcaatgtggcgcaacgattagcggaattgctgaacgaaaagcctggtgaaaccgtg
ggctatcgcatgcgcgcacaaagttgcgtagggccgcagacccggctggaagtggtaaca
gagggcgtcctgacgcggatgatccaacgcgatcctgaactgacaggcgtcgggctggtg
atcctcgacgaatttcacgaacggagtttacaggctgatctggcgctggcgctattgctg
gatgtacagcaagggctgcgggacgatctgaaactgttgattatgtccgccactctggat
aacgggcgtttgcagcagatgttgcccgatgcgccgacgatcgtttctgaaggccgcgca
tttcccgttgagcggcggtatctgccgttggcggcgcatttgcgttttgatgaagcggtg
gcgatagcgacggcggagctattgcgccatgaaagcgggtcactgctgctatttttaccg
ggtgtgggcgaaatcctgcgtgtacaggagcagctggctacgcgtgtaggcagcgatgtt
gtgctgtgtccactgtacggcgcgttaacgctttccgagcagcgtcaggcgattgtgccc
gcgccgcaaggcaaacgcaaagtggtgctggccaccaatattgctgaaaccagcttgacg
atcgaaggcatccgactggtggtggactgcgcccaggaacgcgtggcgcgctatgacgtg
cgtaccggtctgacgcgactgattacccagcgcatcagccaggcttcgatgactcagcgc
gcgggacgtgcgggtcgtctggagcccggtatttgcctgcatctgcttgccaaagagcag
gcagaaagagcggcagcgcagggggaagcggagatattgcagagcgatctgtccgggcta
ctgatggagttgctgcaatggggatgtaccgaacctgagcaactgaactggctggatacg
ccgcccgccatcaacctgcaggcggcaaaacggctgttgcagatgctgggcgcgcttgag
ggcgacaggctcagtgcccgcgggcagaaaatggcggcattgggtaacgatcctcgttta
gcggcgatgctggtcggtgccaaaaataataccgaagcggctacggcggcaaaactggcc
gcgattctggaagagccgccgcgcggtggaagtaccgatctgaccgtggcgtttgcacga
aatcagcccgcctggcagcagcgcagtcaacagttgctgaaacggcttaacgttagcagc
gggcagcccgacagcacgctgctcccctcattgctggcgcgggcgtttgccgatcggata
gcgcgtcgacgcgggcaggaagggcgctatcaactggcgaatggcatgggcgccatgctg
gatgccgatgatgcctcaggacgccatgaatggttgatagcgccacttttgttgcagggc
agcgcttcgccagacgcgcgtatcttgctggctctgccgctggatatcgagtcgctgatg
caggcatgtcctgagctgctgcaacagtccgacaccatcgaatgggatgaaacccaggga
acgttaaaggcattgcgtcggtcgcgcattggtcagctcacggtaaaagtacagccattg
gccaaaccctcggaagaggagttgcatcaggcgatgttgaatggcattcgcgataaaggg
ctaagtgtgctcaactggacgccggaagccgagcagtttcgactgcgtctgcaatgtgcg
gcaaactggttgccagagtatgactggcccgcggtagatgaggattctctgctggcgtcg
ctggagacctggctgctgccgcacatgggcggtgtgcactcgttacgcgcattaaaagca
ctcaatgtgggacaggcgttgcgcggtttactggactggtcaatgttgcaacgtctggat
agtgagctgcctgcgcattacactgtgccgacgggaagccggattgccattcgctatcat
gaggataatcctccagtattggcagttcggatgcaggaaatgtttggtgaagcaaagact
ccagccattgcccaggggcgcgtgccgctggtgctggagctgctgtctccggcccaaaga
ccgctacaggtgacgagcgatctgagcgcgttctggcagggatcgtaccgcgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgatccggcgaataccgcg
ccaacgcggcgtaccaaaaagtattcgtaa
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