Citrobacter youngae: CD187_20250
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Entry
CD187_20250 CDS
T05526
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
cyo
Citrobacter youngae
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyo03021
]
CD187_20250
Transcription machinery [BR:
cyo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CD187_20250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Flavi_DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AWV28402
LinkDB
All DBs
Position
4130818..4133724
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFSSTGENRLYARSDSPVTRVMFNPGDT
ITSHEGWQLHVDEVKEENGLLAYIGTRLDTEETGVMLREVLLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDLLIVDEAHHLVWSEDAPSREYMAIE
QLAERVPGILLLTATPEQLGMESHFARLRLLDPSRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNNELNMLGDMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGD
TGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFSEEDSGAQVMLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDTVYNNLIGYLAEPENT
EGFDDLIKTCREQHDALKAQLEQGRDRLLEIHSNGGEKALALAESIEEQDDDTSLIAFAM
NLFDIVGINQDDRGDNLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGEAQVEKSAR
ALIDAARKEADEKLTAELSRLEALRAVNPNIRDDELSAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttggt
actgttgtcgccatggatgcgcgaaccgtcactttacttttctcatcgacgggcgaaaac
cgtctgtatgcgcgcagtgattcccccgtgacccgcgtgatgttcaatcctggcgatacg
ataacaagccatgaaggctggcaactgcatgtcgatgaagtaaaagaagaaaacggcctg
cttgcctatatcggaacccgcctggataccgaagaaaccggtgtcatgctgcgtgaagta
ctgctcgacagcaaactggtattcagcaaaccacaagatcgcctgtttgctggccagatt
gaccgcatggatcgctttgctctgcgctatcgcgcacgtaaatttcagagcgaacaatac
cgtatgccgtggagtgggttgcgtggtcaacgtaccagcctgattcctcaccagttgaac
attgcccatgatgttggccgtcgtcatgcccctcgcgttttactggcagatgaagtgggt
ttaggtaaaaccattgaagccgggatgatcctgcatcaacaactgctgtccggcgccgca
gagcgcgtgctgatcatcgtcccggagacattacagcatcagtggctggtcgaaatgctg
cgccgtttcaacctgcgttttgcgctgtttgatgatgagcgttatgcagaagcgcagcac
gacgcctacaacccgtttgaaaccgaacaactggtcatctgctcgctggactttgcccgt
cgtaataaacaacgtctggagcacctgtgtgacgccgagtgggatctgctgattgtcgat
gaagcccatcaccttgtgtggagcgaagacgcgcccagccgcgaatatatggccattgaa
caactggcagaacgtgtgccgggcatcctgctgctaaccgctacaccggagcagctgggc
atggaaagtcactttgcacgcctgcgcctgctggacccgagccgtttccacgatttcgcc
cagtttgttgaagagcaaaaaaattatcgtccggtcgccgacgccgtcgccatgctactg
gcaggcaacaagctgagtaacaatgagctgaacatgttaggcgacatgattggcgagcag
gacattgagccgctattgcaggcggcaaacagcgacagcgaagacgcccagagcgcgcgt
caggaactggtttcgatgctgatggaccgccatggcaccagccgtgtgctgttccgtaac
acccgtaacggtgtgaaaggcttcccgaaacgcgagctgcataccatcaagctgccgctg
ccgacccaataccagacggcgattaaagtctccggcattatgggcgcgcgtaaaagtgca
gaagaccgggcgcgcgacatgctctacccggaacagatttatcaggaattcgaaggcgac
accggcacctggtggaactttgacccgcgcgtggaatggctgatgggctacctgaccagc
caccgctcgcaaaaagtattagttatctgtgcaaaagccaccaccgcgcttcagctggag
caggttctgcgcgaacgcgaaggtatccgcgctgccgtattccatgaagggatgtcgatc
attgagcgtgaccgcgccgcagcatggtttagcgaagaagatagcggcgcccaggtaatg
ctgtgctctgaaatcggctccgaagggcgtaacttccagttcgccagcaatctggtgatg
tttgacctgccgttcaacccggatctgctggaacagcgtattggccgtctggaccgtatt
ggtcaggcgcatgatattcagattcacgttccgtacctggaaaaaaccgcgcaatctgtg
ctggtgcgctggtaccacgaaggtctggatgcgttcgaacacacctgtccgaccggccgt
actatctatgacacggtctataacaatctgatcggctacctggctgaaccagaaaatacc
gagggctttgacgatctgatcaaaacctgccgcgaacagcatgacgcgctgaaagcacag
ctagagcaaggtcgcgatcgcctgctggagatccactctaacggcggcgaaaaagcactg
gcgctggctgagagtattgaagaacaggacgacgataccagcctgatcgccttcgccatg
aacctgtttgatatcgtcggtattaatcaggatgaccgtggcgacaatttaatcgtgctg
acgccgtccgatcatatgctggtgccggattttcctgggctgccggaagatggctgcacc
attacgttcgagcgcgatgtcgccctgtcgcgtgaagatgcacaatttattacctgggag
catccgctgatccgcaatggtctggatctgatcctctccggcgacaccggaagcagcact
atttcgttgttgaaaaacaaagcattacctgttggtacactgctggttgagctggtctat
gttgttgaagcgcaagcgccgaaacaactgcagctaaaccgcttcctgccaccaacgccg
gtacgcatgctgctggataaaaacggcaataaccttgccgcgcaggttgaattcgaaacc
tttaaccgtcagctcagcgccgttaaccgccacaccggcagcaaactggtcaacgccgtg
cagcaggatgttcatgccattttgcaactcggtgaagcgcaggtggaaaaatcagcccgc
gcgctgatcgacgcagcgcgtaaagaagctgacgagaagctgacggcagaactttcccgt
ctcgaagcgctgcgtgccgttaacccgaacatccgtgatgacgaacttagcgcaattgaa
agcaaccgtcagcaggtgatggaaagcctggatcaggcgggctggcgtctcgatgccctg
cgcctgatcgtcgtgacgcatcaataa
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