Citrobacter youngae: CD187_21605
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Entry
CD187_21605 CDS
T05526
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cyo
Citrobacter youngae
Pathway
cyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD187_21605 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyo03019
]
CD187_21605 (rnr)
03016 Transfer RNA biogenesis [BR:
cyo03016
]
CD187_21605 (rnr)
Enzymes [BR:
cyo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CD187_21605 (rnr)
Messenger RNA biogenesis [BR:
cyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CD187_21605 (rnr)
Transfer RNA biogenesis [BR:
cyo03016
]
Prokaryotic type
tRNA degradation factors
CD187_21605 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AWV28652
LinkDB
All DBs
Position
complement(4414946..4417408)
Genome browser
AA seq
820 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAAELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPQA
VEKQVAGLKEEVPEEAKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAINSFRSVLSELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNEGKTAREKAKKGDAGKNTGKRRQMGKKVNFEPDSAFRGEKKGRAKPQ
ADKNAAEKKGDKKAKKPSAKTLKIAAATKAKRAAKKKVAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgaacatttaactaaacgtgaaaagccggccaaccgcgatgagctg
gccgctgaactcaatattgaaggtgaagagcagcaagaagcgctgcgtcgtcgcctgcgc
gcgatggagcgtgacggacaactggtcttcacccgtcgtcaatgctatgcgctgccggag
cgtctcgacctgctgaaaggtaccgttattggccaccgtgatggctacggctttctgcgc
gttgaaggccgcaaagatgacctgtatctgtccagcgagcaaatgaaaacctgcattcat
ggcgatcaggtgctggcgcagccgttgggcgcggaccgtaaaggtcgccgcgaagcgcgt
attgtgcgcgtactggtgccgaaaaccagccagattgtcggccgctacttcaccgacgct
ggtgttggatttgtcgtcccagacgacagccgcctgagcttcgatattctgatcccgccg
gaagaggtaatgggcgctcgtatgggctttgtggttgtcgttgaactgacccagcgtcca
actcgccgcactaaagcggtgggtaaaattgttgaagtgctgggtgacaacatgggaacc
agcatggccgttgatatggccctgcgtactcatgaaatcccatatatctggccgcaggcg
gttgagaaacaggtcgccgggctgaaagaagaagtgccggaagaggcgaaagtaggacgt
gtcgatctgcgctccctgccgctggtgactatcgatggcgaagatgcgcgcgacttcgac
gatgcggtttattgcgagaagaaacgcggcggtggttggcgtttatgggtggcgattgct
gacgtaagctattacgttcgcccgccgactccgctggaccaggaagcgcgtagccgtggc
acatccgtttacttcccgtcgcaggttgttccgatgctgccggaagtgctgtccaacgga
ttgtgttcactcaacccgcaggtggacaggttgtgtatggtctgtgaaatgaccatttcg
tcgaaaggccgtttaaccggctttaaattctacgaagcggtcatgagttcccacgcacgt
ctgacctacaccaaggtctggcatatgctgcaaggcgaccaggagctgcgtgagcagtac
gcaccgctggttaaacacattgaagagctgcataacctctacaaagtgctggataaggcc
cgtgaagagcgtggcggtatctcgtttgaaagtgaagaggcgaagtttatcttcaatgct
gaacgccgtattgagcgtatcgagcagacgcagcgtaacgacgcgcacaagctgattgaa
gagtgcatgatcatggcgaacatctccgcggcacgattcgttgagaaagccaaagagcca
gcgctgttccgtattcacgataagccgacgaccgaagcgattaactcgttccgttccgtc
ctgtcagagctggggctggagctgcctggtggcaacaaacctgagccgcgtgattacgct
gaactgctggagtcgattgctgaccgtcctgacgcagaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggcgatttatgatccggaaaaccgtggtcactttggcctggcgctg
caatcttatgcacactttacttcaccgatccgtcgttacccggatctctccttgcaccgg
gcgattaagtatctgctggcgcaggagcagggccataagggcaacaccacggaaaccggt
ggctaccattattcgatggaagagatgctgcaactgggtcagcactgttcgatggccgag
cgccgtgctgatgaagccacgcgtgatgtctctgactggctgaagtgcgacttcatgctg
gaccaggtgggtaatgtcttcaaaggcgtgattgccagcgtgaccggatttggtttcttt
gtccgtcttgatgaactgtttatcgacggtctggtgcatgtctcctctctggataacgac
tactatcgtttcgaccaggttgggcagcgcctgacgggggaatccagcggccagatgtat
cgcctgggcgatcgcgtggaagttcgcgtggaagcagtcaacatggacgagcgtaagatc
gacttcagcttgatctccagcgaacgtgcgccgcgtaatgaagggaaaaccgcgcgcgaa
aaagccaaaaaaggcgatgcgggtaaaaataccggtaaacgtcgtcagatgggcaaaaag
gtgaatttcgagccggacagcgctttccgcggcgagaagaaaggcagagccaaacctcag
gcggataagaatgcggctgagaagaaaggtgataaaaaagcgaaaaagccttcggcaaaa
acgcttaaaattgctgccgccactaaagctaaacgtgcggcgaaaaagaaagtcgcacaa
taa
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