Rippkaea orientalis PCC 8801: PCC8801_1036
Help
Entry
PCC8801_1036 CDS
T00806
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cyp
Rippkaea orientalis PCC 8801
Pathway
cyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC8801_1036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyp03019
]
PCC8801_1036
03400 DNA repair and recombination proteins [BR:
cyp03400
]
PCC8801_1036
Enzymes [BR:
cyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC8801_1036
Messenger RNA biogenesis [BR:
cyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC8801_1036
DNA repair and recombination proteins [BR:
cyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCC8801_1036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_29
Terminase_5
Helicase_Sgs1
Sigma70_r4_2
HTH_23
HTH_5
HTH_IclR
HTH_24
GerE
HTH_28
TrmB
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACK65111
UniProt:
B7K0X0
LinkDB
All DBs
Position
1090555..1092684
Genome browser
AA seq
709 aa
AA seq
DB search
MFQSNSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPG
LTVVVSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERL
LNDKFTPFLDFLAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLALTA
TATKRVREDIIHQLALKQPGIHITSFNRPNLDYDVQFKERRSYNKLLSYIRQQKGSGIVY
CLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAFGMGINK
PDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKSTPQEQK
IARQQLRQVVDYAEGTECRRTIVLRYFGERFAGNCGKCDNCRDPKPLEDWTIEAQKFLSC
VARCRERFGMTHIIDVLRGSKKRKIEQNGHHLLSTYGIGQDRSVAEWKMLGRSLIHQGLL
DETSDGFSVLKLNKGSWEVLRKQRTVEIAITQASASKVLGEYNPRAAEIELLFERLRQLR
KQLADSNQIAPYVIFADSSLRLMAQLKPKTLEEFAKISGVTDYKLSQYGERFLSEIRAFS
QEQSLPNPLPTQSNMITLQLYQQGLNVQDIAEMRGLKESTVYSHLSELIEMQQPVDINQF
VLPVKKDLIIQAIKKIGDQSLTPIKEYLGDNYSYNEIRLVRAWYRRENK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttccagtctaactcccttgaacagtccttaaaatatttctttggttatgatagtttt
cgccctggacaagctaaaattatccaagaagccctacaaaatcgagatttattggtgatt
atgcccacaggaggcggaaaatccctctgttttcaactaccagcccttctgaagcctggg
ttaaccgtggtggtatctcccctaattgccttgatgcaagatcaagtcgataccctctta
gataatggtattggggcaacatttcttaatagtagcctgaagtcggaagaagtgcgatcg
cgtgaacaggccattattaaagggaaaatcaagttattatacgtcgcccctgaacgatta
ttaaacgataagtttactccttttcttgattttcttgctgaaaaaattggggtttctttc
tttgctatcgatgaagcccattgtgtgtctgaatgggggcatgattttagacctgaatac
cgccaattaaaacagcttcgtcaacggtatcctcaagtccccatgttggcattaacagca
acagcaaccaagcgagttcgagaagatattattcatcaattagcacttaaacaacctggc
attcatattaccagttttaatcgtcccaaccttgactatgacgttcagtttaaagaacgg
cgtagctacaataaattactgagttatattcgccaacaaaaaggatcaggaattgtctat
tgtttaagtcgtcgttccgtcgatgatatcgcctttcggttgcaaaatgatggcattaaa
gccttaccttatcatgcgggaatggctgatgaagcaagggcattaaaccaaaatcgcttt
attcgagatgatgtccaagtgatggtagcaaccattgcctttggcatgggaattaataag
cctgatgtacgctttgttattcattatgatttaccgcgtaacttagaaggctactatcaa
gaatcaggccgcgcaggaagggatggagaacccgcagaatgcaccctgttttttagctta
tctgatctcaagaaaatagaatatttaatcgatcaaaaaagcactccccaagaacaaaaa
attgcccgtcaacagttgcgacaagtggtagactatgccgaaggaaccgaatgtcgtcgc
accattgttttacgctattttggtgaaagatttgctggcaattgtggcaagtgtgataat
tgtcgtgatcctaaacctctagaagattggacgattgaagcccaaaagtttttatcttgc
gttgcccgttgtcgagaacggtttggcatgacccatattatcgatgtcttaagagggtca
aaaaagcgtaaaatagaacagaatggacatcatttactgtcaacttatggtatcggtcaa
gatagaagtgtagccgaatggaaaatgttaggacggtctttaattcatcaaggattatta
gatgaaaccagcgatggattttccgttttaaaactgaataaagggagttgggaagtctta
cgcaaacagagaacagtagaaattgctattacccaagcatcggcttctaaagtgttagga
gaatataatcctagggctgccgaaattgagttattatttgaacgtttaagacaattaaga
aaacaactagccgacagtaatcaaattgccccctatgttatttttgctgattcaagttta
aggttaatggcacaattaaaacccaaaaccctagaagagtttgctaaaatttctggagta
acagattataaattgagtcaatacggagaaaggtttttatcagaaattagggcattttct
caagaacaatctctccctaatcccctgccgacccaaagtaatatgataactttgcaactt
tatcaacaggggttaaatgtgcaagacatcgctgaaatgcgaggcttaaaagaaagtacc
gtttactcccatctctcagaactgattgaaatgcagcaacccgttgatattaatcaattt
gttcttcctgtgaaaaaagatttgattattcaagctattaaaaaaattggcgatcaatcc
ttaaccccaattaaagaatatttaggggacaattacagttataatgaaattagattagtc
agagcttggtatcgaagagagaataagtaa
DBGET
integrated database retrieval system
