Rippkaea orientalis PCC 8801: PCC8801_1532
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Entry
PCC8801_1532 CDS
T00806
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cyp
Rippkaea orientalis PCC 8801
Pathway
cyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC8801_1532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyp03019
]
PCC8801_1532
03400 DNA repair and recombination proteins [BR:
cyp03400
]
PCC8801_1532
Enzymes [BR:
cyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCC8801_1532
Messenger RNA biogenesis [BR:
cyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC8801_1532
DNA repair and recombination proteins [BR:
cyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCC8801_1532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
MarR_2
RPA_C
HTH_11
Cas3-like_C_2
HTH_28
Pribosyltran
RNA_pol_Rpc34
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ACK65586
UniProt:
B7JUP2
LinkDB
All DBs
Position
1605600..1607693
Genome browser
AA seq
697 aa
AA seq
DB search
MTSQLYDKALRYLRHALNNPKANFRDGQWEAISNLVNNHSRLLVVQRTGWGKSLVYFIAT
RLLRDQGAGTSLLISPLLALMRNQIATAQRINVNADTINSSNTEEWNRVQEQLLAGNIDI
LLISPEKLANDQFRENILITIASRISLFVVDEAHCISDWGHDFRPDYRRIARILQALPAN
IPVLATTATANNRVVNDIKAQLGDSLQISRGNLTRQSLKLQNLYFPSPAARLAWLAQYIP
TLPSSGIVYTLTVRDAQRVANWLKQQGIDAEAYYGALEKKIREPLEDQLLNNEIKVLVAT
TALGMGFDKPDLGFVIHYQRPGSVVHYYQQVGRAGRAVDQAYGILLSGDEDEEISKYFIE
NAFPPEVHNQEVLNALESAQNGLSVRELEQKLNLSRGQIDKVLKLLSLESPALVSKQESK
WYATAVNYQPNRQKIKQLTDIRYEEQDQMRDYMKSDSCLMQFLASALDDENPTVCGKCAV
CLGKSLLPVTYSPNLVDQAVMFLKRSDHIIEPRKQWPLKGAFSVYQFSGNIKPELTAENG
RALCLWGDAGWGQLVKQGKYETNHFDDHLVEAMAEMIQRWKPEPKPTWITCIPSLNRPHL
VPNFSQRLANHLQILFIPVVTKIKKNPPQKNMSNSYQQAHNLDGVFSIDREKVMPDSVFL
VDDFVDSRWTLTVVSALLRQTGSGQVFPTTLALNSLS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtcaactttatgacaaggctttacgatacctccgccatgctttaaataaccct
aaagctaactttcgagacggacaatgggaagctatttcaaatttagtaaacaatcactct
cgtttgttagtcgttcaacggacaggatggggtaaaagtttagtctattttatcgcaact
aggctattacgggatcaaggagccggaaccagtttattaatttcacctttactagcttta
atgcgtaaccaaattgcgaccgcacaacgaattaatgttaatgcagacaccatcaattct
agtaatactgaggaatggaatagagttcaagaacaattattggcaggaaatattgatatt
ttattaatttctcctgaaaaacttgctaatgatcaatttagagagaatattttgattacc
attgcttctcgtattagtttattcgtcgtagatgaggcgcactgtatttctgattgggga
catgactttagaccagattatcgtcgaattgcccgtattttacaagctttacccgctaat
attcctgttttagccactacagcaaccgcaaataatcgagtagttaatgatattaaggcg
caattgggagacagcttacaaattagtcgaggaaacttaaccagacaaagcttaaagcta
caaaacctctattttcctagtcctgctgcacgcttagcttggttagcacaatatattcct
actttaccgagttctggtatcgtctataccctaacagtaagggacgctcaaagggtggcc
aactggttaaaacagcaaggaattgatgcagaagcttattatggagcgttagagaaaaaa
atcagggaacctttggaagatcaactattaaacaatgaaattaaggtattagtagcaaca
acggcgttagggatgggatttgacaaacccgatttaggttttgtgatacactatcagcgt
cctggttctgttgttcactattatcagcaagtaggacgtgccggacgtgcagtagatcaa
gcttatggaattcttttaagtggggatgaagacgaagaaattagcaaatattttatcgaa
aatgcttttccacctgaagttcacaaccaagaagttttaaatgctctagaatcggctcaa
aatggcttatctgtacgagaattagagcaaaaattaaatctatcaaggggacaaatcgat
aaggtattaaagttactgtccttggaatctcctgcacttgtaagcaagcaagagtcaaaa
tggtatgcaacagccgtcaattatcaacccaatcgacaaaaaattaaacaattaaccgat
attcgttacgaagaacaagatcaaatgcgggattatatgaagagtgacagttgtttgatg
cagtttttagcctctgcattagatgatgaaaacccgacagtttgtggaaaatgtgccgtt
tgtttaggtaaatctttactgcctgtcacctattcccctaatttagttgatcaagcagta
atgtttctcaaacgcagtgatcacatcatcgaaccgaggaaacaatggccattaaaaggt
gcattttcagtgtatcagttttcaggtaacattaaaccagaattaacagcagaaaatggt
agagcattatgtttatggggagatgctggatggggacaattagtcaaacaaggaaaatat
gaaactaatcattttgatgatcacttggtagaagcaatggcagaaatgattcaacgttgg
aaacctgaacctaaacccacttggataacttgtattccttctctaaatcgtccccattta
gtgcctaattttagtcaaagattggctaatcatttacaaatactttttattccagtggtt
acaaaaatcaagaaaaatccaccacaaaaaaacatgagcaatagttatcaacaagctcac
aatttagatggagtatttagcatcgatagggaaaaagtaatgccagattctgtcttttta
gtcgatgattttgttgattctcgttggacattaaccgtcgtttctgcactgttacgtcaa
actggaagtggtcaagtttttcccacaactttagcgttaaattctttatcttaa
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