Rippkaea orientalis PCC 8801: PCC8801_1750
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Entry
PCC8801_1750 CDS
T00806
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyp
Rippkaea orientalis PCC 8801
Pathway
cyp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PCC8801_1750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyp03021
]
PCC8801_1750
03400 DNA repair and recombination proteins [BR:
cyp03400
]
PCC8801_1750
Enzymes [BR:
cyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PCC8801_1750
Transcription machinery [BR:
cyp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PCC8801_1750
DNA repair and recombination proteins [BR:
cyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PCC8801_1750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ACK65797
UniProt:
B7JWU8
LinkDB
All DBs
Position
complement(1832914..1836858)
Genome browser
AA seq
1314 aa
AA seq
DB search
MTFYNYIVDKGRLKKLIAWAYRNYGSARSSQMADNLKDLGFRFATKAGVSISIDDLTIPP
TKRGLLESAQESIRITESRYAKGEITEVERFQKVIDTWNSTSEELKDEVIRNFQETDPLN
SVYMMAFSGARGNMSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYVISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVRETDCGTQRGLMVSAMKDGDRVKIPLVDRLY
GRVLAADVVVDGEVLAKRNQSIDPELAAFLSERVEEVMVRSPLTCEAARSVCQNCYGWSL
AVGRLVDKGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQVKAPGRGKISWGKGL
NTRKVRTRHGDDAEQVEIAGDLVWTPTDGGKAVPFSVTPGSFLFVTQGQTVETDQLLAEV
TNTRVQKSTERATKDVTTDLAGEVLFSQLVPEEKTDRQGNTTRIAQRGGLLWVLSGQVYN
LPPGAEPVVSNGDSVEPGTVLAETKLISVHGGVVRRPEGSREIEIITASVLLDHAEVKME
SSGGREQYIIHTQDGQRFLLLAAPDTKVQNHAIIAELIDDRYQTNTGGILRYGGIEVSKG
SRKMGYEVTQGGSLLWIPEETHEVNKDISLLVVEDGQYVEAGTEVVKDIFTSISGVVEVI
AKNDILREIIIKPGEFYLDDSGLGSSGHTIANGDLVPPGTEVLPGIVTEELHYAEWVEST
EGVGLLLRPVEEFPVSDSPATPKQGSINASGGRQIELRSVQRIFYKDGERVKSVDGTQLL
STQLVLEIEVDSSEHTPHLTADIELKEDPKIEGTRLQLVILESLVLRRDLDTDPHGGLIK
TNVLVKNGEQIPPGAVVAATEIQCSVGGEVRGIKQGIEAIRRILIVRDEDKARLVLDTPP
SVGVNSLIVESGELAPGMPSDVSGRVIAVNPLGDSGQFELILRKARPYRVSAGAILHIDD
GDLVQRGDNLVLLVFERSKTGDIIQGLPRIEELLEARKPKEACILARKPGVTQVEYLEDE
SVDVKIIEEDGTISEYPILPNQNVLVSDGTRVDVGEPITDGPANPHEILEVFFNYYVDRL
GVYEAALKGLRAAQQFLVDQVQTVYQSQGIDISDKHIEVIVRQMTSKVRVDDGGDTTMLP
GELVELRQIEQVNEAMAITGGAPARYTPILLGITKASLNTDSFISAASFQETTRVLTEAA
IEGKSDWLRGLKENVIIGRLIPAGTGFHLSEDLSTIEPEFESERPSRSPSYSREFERSSG
ESNHPNRLLGSNLDEVDENMVLDDNIARAYAEGDAPWSYDVDDDDDDEFDDDDD
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgacattctacaattacattgttgacaaaggtcgtttgaaaaagttaattgcttgggca
taccgcaattatgggtcagcaagaagctctcaaatggctgataatttgaaagatttgggc
tttcggtttgcgacaaaagcaggggtttctattagtattgatgacttaacgattccccca
acaaaacgaggcttattagagagtgcccaagaatcaattcgcattactgaatcacgctac
gctaagggagaaattaccgaagtagaacggttccaaaaagtaatcgatacctggaatagt
acctccgaagaactcaaagatgaagtcattcgcaattttcaggaaaccgatcccctcaat
tccgtctatatgatggctttctccggtgcacggggaaatatgagccaagttcgtcaatta
gtgggaatgcggggcttaatggctgatccccaaggggaaatcatcgacttacccatcaaa
actaacttccgagaagggttaaccgttaccgaatacgtcatctcctcctatggagcccgt
aaaggtctggtagacaccgccttacggacggctgactctggttatctcacccgacgctta
gtcgatgtatcccaagacgtgatcgtccgagaaactgactgcggaacccaacgaggactc
atggtcagtgcgatgaaagacggcgatcgcgtgaaaattcccctcgttgatcgcttgtat
ggacgggttttagccgccgatgtcgtcgttgatggggaagtcttagctaaacgcaaccaa
agtatcgatcctgaactggctgccttcctcagtgaacgggttgaagaagtgatggtgcga
tcgcctctcacctgcgaagccgcgcgatcagtctgtcaaaattgttacggttggagttta
gctgtcggtcggctggtggacaaaggagaagccgttgggattattgccgcccaatccatc
ggcgaacccggaacccagttaaccatgcggaccttccacactggaggggtcttcaccgga
gaagtggcccgtcaagtcaaagcccccggacggggtaagatttcctggggtaagggatta
aatacccgtaaagtccggactcgtcatggggacgatgccgaacaggtagaaattgccgga
gatctggtttggactcccaccgatggaggtaaagcggttcccttttccgttacacctggg
tctttcctcttcgttacccaaggccagaccgtggaaaccgatcaactcctagccgaagtc
accaatacccgtgttcaaaaatctacagaacgcgcaaccaaggacgtaaccaccgacctc
gccggagaagtcctctttagtcagttagtacccgaagaaaagaccgatcgccagggcaat
actacccgcatcgcccaacgggggggactcctttgggtactctcaggacaggtctataat
ttgccaccaggggctgaaccagtggtatctaacggagattctgtcgaaccagggacagtt
ttagctgaaaccaagttaattagcgtccatggcggggtagtacgccgtccagagggtagc
cgcgagattgagattatcactgcttcagtgttgttggatcatgctgaagtgaaaatggaa
agtagcggaggacgggaacagtacattattcacacccaggacggacagcgatttttatta
ctggccgcccccgataccaaagtccaaaatcatgccattatcgccgagttgattgacgat
cgctatcaaaccaacaccggaggcattctgcgctacggaggcatcgaagtctctaagggt
agccgtaaaatgggctacgaggtgacgcaagggggatcattgttatggattcctgaagaa
acccacgaagttaacaaggatatttccttactggtggtggaagatggtcagtacgtcgaa
gccggaaccgaggtcgttaaggatattttcacctctatcagtggggtagttgaagtcatc
gctaaaaacgatattctccgcgaaatcatcattaaacccggagaattttacctcgatgat
agtggcttggggtcttctggccatacaatcgccaacggagatttagttcccccaggaaca
gaagtgttaccggggatagtgacagaagaactccactatgccgagtgggttgaaagtaca
gaaggggtcggactgttactgcgtcccgtagaggagttcccggtgtccgattcgccagcc
actcctaaacaggggtcgattaatgccagtggtggacgacaaattgagttacggtctgtt
caacgcatcttttataaggatggagaacgggttaaatccgttgacgggactcaattattg
agtacccaattggtcttagaaatcgaggtggattcttctgaacatactcctcacctgacg
gccgatattgaattgaaggaagatcccaagattgaaggaactcgcctacagttggtgatt
ctcgaatctttggtcttgcggcgggatcttgatactgacccccatggtggattgattaag
acgaatgtgttggtcaaaaacggtgaacaaatccctccaggggcggttgtagcagcgacg
gagattcaatgttctgtcggcggtgaagtccgagggattaagcaaggaattgaagccatt
cgtcggattttaatcgttcgggatgaagataaggcaaggctggttctggatactcctcca
tcggttggggtgaatagcttgattgtggaatcaggagaattagcccctggtatgccttca
gacgtgagtgggcgggtaatagccgttaatcctcttggagattcggggcaatttgagtta
attctccgtaaagcccgtccctatcgggtgtcagccggggcaattttacacattgacgat
ggcgatttagtccaacggggcgataatttggtgttattggtgtttgaacgctcaaaaacc
ggggacatcatccaagggttgcctcggattgaagagttattggaagcccgtaagcccaaa
gaagcctgtattttagcccgcaaacccggggtaactcaggtggagtatttggaagatgag
tcggtggatgtcaagattattgaggaggatgggacgattagtgagtatcccattctgcct
aatcaaaacgtcttggtatctgatggaactcgggtggatgtgggtgaacccatcaccgac
ggaccagctaatccccacgaaattcttgaggtcttcttcaactattatgtagatcggttg
ggggtttatgaagcagccttgaaaggactgcgggcggcacagcagtttctggtggatcag
gtgcaaacggtgtatcagtcccaggggattgatatttctgataagcatattgaggtaatt
gtgcgtcagatgacctctaaagtccgggtggacgatggcggtgatacgacgatgttaccc
ggagaattggtggaattgcgccaaattgaacaggtcaatgaagccatggcgattacaggg
ggtgctcctgcccgatatacgccgattttattgggaattaccaaggcttccttgaatacg
gattcctttattagtgcggcttccttccaagagacaactcgggtattaaccgaagcggcg
atcgaaggtaagtccgattggctacggggactcaaggaaaacgtgattattgggcgtttg
atcccggccggaaccggattccatctgtcggaggatctttccaccatagaaccggaattt
gagtcagaacggccgagtcgttctccttcctatagtcgggaatttgagcggtcttcggga
gagtcgaaccatccgaatcgtttgttaggctctaatttagacgaggtcgatgagaacatg
gtactcgatgataatatcgcccgtgcctatgctgaaggagatgccccctggtcctatgat
gtggatgatgatgatgatgatgagtttgatgatgacgacgattaa
DBGET
integrated database retrieval system
